Hb_008834_010

Information

Type -
Description -
Location Contig8834: 10337-14987
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04660g
description hypothetical protein
nr
ID XP_006373742.1
description hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
swissprot
ID Q93Y09
description Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1
trembl
ID U5FMW4
description Carboxypeptidase OS=Populus trichocarpa GN=POPTR_0016s04660g PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61468: 10375-14847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008834_010 0.0 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
2 Hb_000101_320 0.1067775399 - - -
3 Hb_017225_030 0.111166953 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
4 Hb_004312_020 0.1158012652 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000685_140 0.1159142649 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
6 Hb_000260_730 0.1227881536 - - -
7 Hb_001452_090 0.13056873 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
8 Hb_003994_070 0.1314894875 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_005920_030 0.1346750565 - - putative polyprotein [Oryza sativa Japonica Group]
10 Hb_035651_010 0.1354199686 - - receptor-kinase, putative [Ricinus communis]
11 Hb_072173_010 0.1380400146 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
12 Hb_001856_280 0.1389092191 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
13 Hb_043792_030 0.1393676641 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
14 Hb_155423_010 0.1496569962 - - -
15 Hb_001411_100 0.1508355206 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
16 Hb_004520_010 0.1513546221 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_000600_080 0.1571720628 - - -
18 Hb_001345_040 0.1583987408 - - hypothetical protein VITISV_015004 [Vitis vinifera]
19 Hb_001301_010 0.1608442276 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_002631_270 0.1615450836 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]

Gene co-expression network

sample Hb_008834_010 Hb_008834_010 Hb_000101_320 Hb_000101_320 Hb_008834_010--Hb_000101_320 Hb_017225_030 Hb_017225_030 Hb_008834_010--Hb_017225_030 Hb_004312_020 Hb_004312_020 Hb_008834_010--Hb_004312_020 Hb_000685_140 Hb_000685_140 Hb_008834_010--Hb_000685_140 Hb_000260_730 Hb_000260_730 Hb_008834_010--Hb_000260_730 Hb_001452_090 Hb_001452_090 Hb_008834_010--Hb_001452_090 Hb_000101_320--Hb_001452_090 Hb_000101_320--Hb_000685_140 Hb_001411_100 Hb_001411_100 Hb_000101_320--Hb_001411_100 Hb_028872_100 Hb_028872_100 Hb_000101_320--Hb_028872_100 Hb_000009_390 Hb_000009_390 Hb_000101_320--Hb_000009_390 Hb_002631_270 Hb_002631_270 Hb_017225_030--Hb_002631_270 Hb_017225_030--Hb_000260_730 Hb_029727_010 Hb_029727_010 Hb_017225_030--Hb_029727_010 Hb_000169_100 Hb_000169_100 Hb_017225_030--Hb_000169_100 Hb_151870_010 Hb_151870_010 Hb_017225_030--Hb_151870_010 Hb_001345_040 Hb_001345_040 Hb_004312_020--Hb_001345_040 Hb_001366_260 Hb_001366_260 Hb_004312_020--Hb_001366_260 Hb_001468_040 Hb_001468_040 Hb_004312_020--Hb_001468_040 Hb_035651_010 Hb_035651_010 Hb_004312_020--Hb_035651_010 Hb_188075_010 Hb_188075_010 Hb_004312_020--Hb_188075_010 Hb_000685_140--Hb_001411_100 Hb_000685_140--Hb_028872_100 Hb_000685_140--Hb_001452_090 Hb_000600_080 Hb_000600_080 Hb_000685_140--Hb_000600_080 Hb_000260_730--Hb_029727_010 Hb_001856_280 Hb_001856_280 Hb_000260_730--Hb_001856_280 Hb_001005_040 Hb_001005_040 Hb_000260_730--Hb_001005_040 Hb_000260_730--Hb_000169_100 Hb_001452_090--Hb_001411_100 Hb_001452_090--Hb_028872_100 Hb_001452_090--Hb_000009_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0117349 9.82168 3.03752 4.81062 0 0.0230137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0534003 0.0630215 0 16.2895 39.4537

CAGE analysis