Hb_008841_020

Information

Type transcription factor
Description TF Family: PHD
Location Contig8841: 9813-25631
Sequence    

Annotation

kegg
ID vvi:100267421
description uncharacterized LOC100267421
nr
ID XP_012068463.1
description PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
swissprot
ID Q5TKR9
description Histone acetyltransferase KAT6A OS=Rattus norvegicus GN=Kat6a PE=1 SV=2
trembl
ID A0A067KY05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03226 PE=4 SV=1
Gene Ontology
ID GO:0046872
description elm2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61472: 9865-24441 , PASA_asmbl_61473: 13535-24315 , PASA_asmbl_61474: 24476-25069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008841_020 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
2 Hb_001189_070 0.059430297 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
3 Hb_001828_150 0.0618942921 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
4 Hb_000599_250 0.064334454 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
5 Hb_000200_020 0.0696565814 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
6 Hb_006478_020 0.0698236794 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_001489_080 0.0704578749 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_000003_230 0.0712213173 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
9 Hb_000116_270 0.0716138698 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
10 Hb_006573_190 0.0728320706 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
11 Hb_005765_050 0.0736793228 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
12 Hb_076233_040 0.0743575552 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
13 Hb_000566_120 0.0746611886 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
14 Hb_001016_120 0.0748854407 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
15 Hb_004109_220 0.075027849 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
16 Hb_149985_010 0.0775380328 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
17 Hb_004934_100 0.0775512153 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000310_090 0.0777097674 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
19 Hb_003025_100 0.0777495536 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
20 Hb_001218_030 0.078742999 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]

Gene co-expression network

sample Hb_008841_020 Hb_008841_020 Hb_001189_070 Hb_001189_070 Hb_008841_020--Hb_001189_070 Hb_001828_150 Hb_001828_150 Hb_008841_020--Hb_001828_150 Hb_000599_250 Hb_000599_250 Hb_008841_020--Hb_000599_250 Hb_000200_020 Hb_000200_020 Hb_008841_020--Hb_000200_020 Hb_006478_020 Hb_006478_020 Hb_008841_020--Hb_006478_020 Hb_001489_080 Hb_001489_080 Hb_008841_020--Hb_001489_080 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_000347_240 Hb_000347_240 Hb_001189_070--Hb_000347_240 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050 Hb_001218_030 Hb_001218_030 Hb_001828_150--Hb_001218_030 Hb_006573_190 Hb_006573_190 Hb_001828_150--Hb_006573_190 Hb_000853_150 Hb_000853_150 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120 Hb_004934_100 Hb_004934_100 Hb_000599_250--Hb_004934_100 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000375_350 Hb_000375_350 Hb_000599_250--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_000116_270 Hb_000116_270 Hb_000200_020--Hb_000116_270 Hb_000200_020--Hb_000599_250 Hb_001366_370 Hb_001366_370 Hb_000200_020--Hb_001366_370 Hb_001159_130 Hb_001159_130 Hb_000200_020--Hb_001159_130 Hb_000783_010 Hb_000783_010 Hb_000200_020--Hb_000783_010 Hb_000200_020--Hb_001218_030 Hb_006478_020--Hb_000116_270 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_001971_010 Hb_001971_010 Hb_006478_020--Hb_001971_010 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180 Hb_000985_030 Hb_000985_030 Hb_001489_080--Hb_000985_030 Hb_001489_080--Hb_004934_100 Hb_000783_020 Hb_000783_020 Hb_001489_080--Hb_000783_020 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_002169_040 Hb_002169_040 Hb_001489_080--Hb_002169_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97536 2.78223 6.00223 8.68508 3.2378 5.44398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.094 9.13097 7.61511 6.80972 6.98229

CAGE analysis