Hb_008847_020

Information

Type -
Description -
Location Contig8847: 30209-30646
Sequence    

Annotation

kegg
ID rcu:RCOM_0293410
description 40S ribosomal protein S17, putative
nr
ID ADR71229.1
description 40S ribosomal protein S17C [Hevea brasiliensis]
swissprot
ID Q9LZ17
description 40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3
trembl
ID I3NMJ2
description 40S ribosomal protein S17C OS=Hevea brasiliensis GN=RPS17C PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61477: 30150-30885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008847_020 0.0 - - 40S ribosomal protein S17C [Hevea brasiliensis]
2 Hb_002781_020 0.0674078114 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
3 Hb_010883_150 0.074849447 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
4 Hb_000199_070 0.0790717345 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000184_050 0.0796979561 - - NOI, putative [Ricinus communis]
6 Hb_000212_470 0.0826496558 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
7 Hb_000526_150 0.085582935 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
8 Hb_010172_030 0.0889240497 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
9 Hb_000634_050 0.0915216227 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
10 Hb_130291_010 0.0915269264 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
11 Hb_012265_010 0.0936036737 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
12 Hb_000061_330 0.0965109314 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
13 Hb_001584_070 0.0971294844 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002293_030 0.0971482613 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
15 Hb_003607_170 0.0973152098 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
16 Hb_011161_050 0.0975590526 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
17 Hb_001123_120 0.0996265261 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
18 Hb_002835_320 0.0999513564 - - 60S ribosomal protein L27B [Hevea brasiliensis]
19 Hb_000815_260 0.1003224319 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
20 Hb_009554_010 0.1014303971 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]

Gene co-expression network

sample Hb_008847_020 Hb_008847_020 Hb_002781_020 Hb_002781_020 Hb_008847_020--Hb_002781_020 Hb_010883_150 Hb_010883_150 Hb_008847_020--Hb_010883_150 Hb_000199_070 Hb_000199_070 Hb_008847_020--Hb_000199_070 Hb_000184_050 Hb_000184_050 Hb_008847_020--Hb_000184_050 Hb_000212_470 Hb_000212_470 Hb_008847_020--Hb_000212_470 Hb_000526_150 Hb_000526_150 Hb_008847_020--Hb_000526_150 Hb_000634_050 Hb_000634_050 Hb_002781_020--Hb_000634_050 Hb_010172_030 Hb_010172_030 Hb_002781_020--Hb_010172_030 Hb_000161_050 Hb_000161_050 Hb_002781_020--Hb_000161_050 Hb_000362_210 Hb_000362_210 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_010883_150--Hb_001584_070 Hb_010883_150--Hb_000526_150 Hb_000840_190 Hb_000840_190 Hb_010883_150--Hb_000840_190 Hb_002311_320 Hb_002311_320 Hb_010883_150--Hb_002311_320 Hb_000061_330 Hb_000061_330 Hb_010883_150--Hb_000061_330 Hb_003058_220 Hb_003058_220 Hb_000199_070--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000199_070--Hb_011161_050 Hb_002701_050 Hb_002701_050 Hb_000199_070--Hb_002701_050 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090 Hb_000184_050--Hb_130291_010 Hb_000815_260 Hb_000815_260 Hb_000184_050--Hb_000815_260 Hb_003683_040 Hb_003683_040 Hb_000184_050--Hb_003683_040 Hb_000196_050 Hb_000196_050 Hb_000184_050--Hb_000196_050 Hb_000184_050--Hb_010883_150 Hb_003226_220 Hb_003226_220 Hb_000212_470--Hb_003226_220 Hb_000820_130 Hb_000820_130 Hb_000212_470--Hb_000820_130 Hb_000212_470--Hb_010883_150 Hb_002835_320 Hb_002835_320 Hb_000212_470--Hb_002835_320 Hb_000236_460 Hb_000236_460 Hb_000212_470--Hb_000236_460 Hb_001269_270 Hb_001269_270 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000545_150 Hb_000545_150 Hb_000526_150--Hb_000545_150 Hb_000526_150--Hb_000634_050 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.2593 18.7802 15.2712 46.6544 66.8451 139.983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
217.582 295.639 90.1737 65.0443 12.1967

CAGE analysis