Hb_008847_030

Information

Type -
Description -
Location Contig8847: 34261-39369
Sequence    

Annotation

kegg
ID rcu:RCOM_0225970
description hypothetical protein
nr
ID XP_012074364.1
description PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q5ZJX5
description TLD domain-containing protein 1 OS=Gallus gallus GN=TLDC1 PE=2 SV=1
trembl
ID A0A067KWD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08793 PE=4 SV=1
Gene Ontology
ID GO:0005509
description tld domain-containing protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61478: 34176-39353
cDNA
(Sanger)
(ID:Location)		 002_M04.ab1: 37287-39353 , 043_N08.ab1: 37311-39313

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008847_030 0.0 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
2 Hb_001021_150 0.0503486531 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
3 Hb_003938_090 0.0528215709 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003416_010 0.0544923357 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
5 Hb_000905_110 0.0551706619 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
6 Hb_000621_010 0.0563298259 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
7 Hb_002641_060 0.0571215435 - - prefoldin subunit, putative [Ricinus communis]
8 Hb_006831_140 0.0614063133 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_001946_400 0.0614923856 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
10 Hb_001902_030 0.0619600153 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
11 Hb_008616_050 0.0632235536 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
12 Hb_007390_010 0.0640389753 - - catalytic, putative [Ricinus communis]
13 Hb_007416_340 0.0647006807 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000081_160 0.0651425936 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
15 Hb_002811_180 0.065150636 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000260_350 0.0653000121 - - conserved hypothetical protein [Ricinus communis]
17 Hb_156279_020 0.0653520854 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
18 Hb_004109_080 0.065740817 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
19 Hb_000116_450 0.0660006912 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
20 Hb_003750_050 0.068067118 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008847_030 Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_001946_400 Hb_001946_400 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_001021_150--Hb_000905_110 Hb_007416_340 Hb_007416_340 Hb_003938_090--Hb_007416_340 Hb_003647_140 Hb_003647_140 Hb_003938_090--Hb_003647_140 Hb_001470_030 Hb_001470_030 Hb_003938_090--Hb_001470_030 Hb_000340_180 Hb_000340_180 Hb_003938_090--Hb_000340_180 Hb_003938_090--Hb_002641_060 Hb_003416_010--Hb_002641_060 Hb_005496_140 Hb_005496_140 Hb_003416_010--Hb_005496_140 Hb_002863_050 Hb_002863_050 Hb_003416_010--Hb_002863_050 Hb_003416_010--Hb_003938_090 Hb_001142_030 Hb_001142_030 Hb_003416_010--Hb_001142_030 Hb_000336_210 Hb_000336_210 Hb_000905_110--Hb_000336_210 Hb_014834_150 Hb_014834_150 Hb_000905_110--Hb_014834_150 Hb_123915_040 Hb_123915_040 Hb_000905_110--Hb_123915_040 Hb_021419_030 Hb_021419_030 Hb_000905_110--Hb_021419_030 Hb_002811_180 Hb_002811_180 Hb_000621_010--Hb_002811_180 Hb_000181_130 Hb_000181_130 Hb_000621_010--Hb_000181_130 Hb_000621_010--Hb_003938_090 Hb_005054_090 Hb_005054_090 Hb_000621_010--Hb_005054_090 Hb_005504_060 Hb_005504_060 Hb_000621_010--Hb_005504_060 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7596 11.1093 13.7763 17.3529 15.5732 16.3526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1556 21.9999 13.5088 15.356 15.6575

CAGE analysis