Hb_008847_040

Information

Type -
Description -
Location Contig8847: 42077-45521
Sequence    

Annotation

kegg
ID rcu:RCOM_0225960
description hypothetical protein
nr
ID XP_002530167.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVZ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0225960 PE=4 SV=1
Gene Ontology
ID GO:0016853
description peptidyl-prolyl cis-trans isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61479: 42002-45518 , PASA_asmbl_61481: 42222-45264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008847_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001328_040 0.0785622651 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
3 Hb_003057_090 0.0945330186 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
4 Hb_007441_330 0.0956353025 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
5 Hb_000815_320 0.0966446322 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
6 Hb_000261_160 0.097445751 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
7 Hb_000347_540 0.0991753538 - - protein binding protein, putative [Ricinus communis]
8 Hb_026314_020 0.101554717 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
9 Hb_002343_060 0.1023290329 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
10 Hb_024682_010 0.1052727134 - - sterol isomerase, putative [Ricinus communis]
11 Hb_001341_090 0.105758186 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
12 Hb_005054_060 0.1076041233 - - PREDICTED: syntaxin-81 [Jatropha curcas]
13 Hb_001662_070 0.1079483548 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
14 Hb_001699_040 0.1082516904 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
15 Hb_000996_140 0.1084604156 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
16 Hb_032264_120 0.1090464414 - - hypothetical protein CICLE_v10013128mg [Citrus clementina]
17 Hb_001604_060 0.1111831521 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
18 Hb_013726_020 0.1119927985 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_000317_390 0.1121298577 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
20 Hb_000251_070 0.1123902309 - - hypothetical protein L484_010641 [Morus notabilis]

Gene co-expression network

sample Hb_008847_040 Hb_008847_040 Hb_001328_040 Hb_001328_040 Hb_008847_040--Hb_001328_040 Hb_003057_090 Hb_003057_090 Hb_008847_040--Hb_003057_090 Hb_007441_330 Hb_007441_330 Hb_008847_040--Hb_007441_330 Hb_000815_320 Hb_000815_320 Hb_008847_040--Hb_000815_320 Hb_000261_160 Hb_000261_160 Hb_008847_040--Hb_000261_160 Hb_000347_540 Hb_000347_540 Hb_008847_040--Hb_000347_540 Hb_001662_070 Hb_001662_070 Hb_001328_040--Hb_001662_070 Hb_001328_040--Hb_000815_320 Hb_032264_120 Hb_032264_120 Hb_001328_040--Hb_032264_120 Hb_002811_260 Hb_002811_260 Hb_001328_040--Hb_002811_260 Hb_165132_010 Hb_165132_010 Hb_001328_040--Hb_165132_010 Hb_005054_060 Hb_005054_060 Hb_003057_090--Hb_005054_060 Hb_001195_480 Hb_001195_480 Hb_003057_090--Hb_001195_480 Hb_003057_090--Hb_000815_320 Hb_118419_010 Hb_118419_010 Hb_003057_090--Hb_118419_010 Hb_002168_060 Hb_002168_060 Hb_003057_090--Hb_002168_060 Hb_000580_090 Hb_000580_090 Hb_003057_090--Hb_000580_090 Hb_000996_140 Hb_000996_140 Hb_007441_330--Hb_000996_140 Hb_026053_020 Hb_026053_020 Hb_007441_330--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_007441_330--Hb_010175_040 Hb_000826_100 Hb_000826_100 Hb_007441_330--Hb_000826_100 Hb_000103_320 Hb_000103_320 Hb_007441_330--Hb_000103_320 Hb_008071_020 Hb_008071_020 Hb_007441_330--Hb_008071_020 Hb_001821_010 Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_000815_320--Hb_001662_070 Hb_000815_320--Hb_001195_480 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_000815_320--Hb_005054_060 Hb_002171_060 Hb_002171_060 Hb_000261_160--Hb_002171_060 Hb_000261_160--Hb_008071_020 Hb_000261_160--Hb_001195_480 Hb_003992_270 Hb_003992_270 Hb_000261_160--Hb_003992_270 Hb_001931_010 Hb_001931_010 Hb_000261_160--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_000261_160--Hb_001279_080 Hb_001579_030 Hb_001579_030 Hb_000347_540--Hb_001579_030 Hb_000347_540--Hb_001662_070 Hb_000347_540--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_000347_540--Hb_000787_050 Hb_004324_070 Hb_004324_070 Hb_000347_540--Hb_004324_070 Hb_025645_010 Hb_025645_010 Hb_000347_540--Hb_025645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.116 3.51636 19.256 25.9006 20.8264 19.8459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.9741 43.9731 21.1652 10.6722 14.4653

CAGE analysis