Hb_008864_020

Information

Type -
Description -
Location Contig8864: 15815-17401
Sequence    

Annotation

kegg
ID rcu:RCOM_0938640
description hypothetical protein
nr
ID XP_002519114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q10EJ2
description CASP-like protein 5C1 OS=Oryza sativa subsp. japonica GN=Os03g0767900 PE=2 SV=1
trembl
ID B9RZE5
description CASP-like protein OS=Ricinus communis GN=RCOM_0938640 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5c1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008864_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_045985_010 0.2723863083 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
3 Hb_006615_110 0.2767319475 transcription factor TF Family: bZIP hypothetical protein JCGZ_11777 [Jatropha curcas]
4 Hb_000988_010 0.2788961472 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
5 Hb_002759_270 0.2825602883 - - Nectarin-1 precursor, putative [Ricinus communis]
6 Hb_126711_010 0.3013723599 - - JAZ10 [Hevea brasiliensis]
7 Hb_000062_200 0.3014265195 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_001862_080 0.3045112025 - - hypothetical protein RCOM_1154950 [Ricinus communis]
9 Hb_187739_010 0.3111237264 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_002805_100 0.3203142566 - - Receptor-like protein 12 [Morus notabilis]
11 Hb_015475_010 0.3232967216 - - hypothetical protein VITISV_034342 [Vitis vinifera]
12 Hb_019733_020 0.3237933468 - - hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
13 Hb_002675_210 0.3256986051 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
14 Hb_002026_160 0.3271831616 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
15 Hb_011671_350 0.3281379612 - - PREDICTED: uncharacterized protein LOC105648659 [Jatropha curcas]
16 Hb_153774_010 0.3298954712 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007125_020 0.3312678374 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
18 Hb_001329_030 0.3314841708 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011120_030 0.3325592524 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
20 Hb_007810_090 0.3327331541 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]

Gene co-expression network

sample Hb_008864_020 Hb_008864_020 Hb_045985_010 Hb_045985_010 Hb_008864_020--Hb_045985_010 Hb_006615_110 Hb_006615_110 Hb_008864_020--Hb_006615_110 Hb_000988_010 Hb_000988_010 Hb_008864_020--Hb_000988_010 Hb_002759_270 Hb_002759_270 Hb_008864_020--Hb_002759_270 Hb_126711_010 Hb_126711_010 Hb_008864_020--Hb_126711_010 Hb_000062_200 Hb_000062_200 Hb_008864_020--Hb_000062_200 Hb_045985_010--Hb_000988_010 Hb_001862_080 Hb_001862_080 Hb_045985_010--Hb_001862_080 Hb_045985_010--Hb_006615_110 Hb_187739_010 Hb_187739_010 Hb_045985_010--Hb_187739_010 Hb_002805_100 Hb_002805_100 Hb_045985_010--Hb_002805_100 Hb_002675_210 Hb_002675_210 Hb_045985_010--Hb_002675_210 Hb_006615_110--Hb_000988_010 Hb_007125_020 Hb_007125_020 Hb_006615_110--Hb_007125_020 Hb_008196_010 Hb_008196_010 Hb_006615_110--Hb_008196_010 Hb_019733_020 Hb_019733_020 Hb_006615_110--Hb_019733_020 Hb_006615_110--Hb_187739_010 Hb_000988_010--Hb_187739_010 Hb_000988_010--Hb_019733_020 Hb_000988_010--Hb_002675_210 Hb_001518_050 Hb_001518_050 Hb_000988_010--Hb_001518_050 Hb_104362_020 Hb_104362_020 Hb_002759_270--Hb_104362_020 Hb_179367_010 Hb_179367_010 Hb_002759_270--Hb_179367_010 Hb_151027_010 Hb_151027_010 Hb_002759_270--Hb_151027_010 Hb_002014_120 Hb_002014_120 Hb_002759_270--Hb_002014_120 Hb_000174_130 Hb_000174_130 Hb_002759_270--Hb_000174_130 Hb_004652_040 Hb_004652_040 Hb_002759_270--Hb_004652_040 Hb_123301_010 Hb_123301_010 Hb_126711_010--Hb_123301_010 Hb_001329_030 Hb_001329_030 Hb_126711_010--Hb_001329_030 Hb_001369_500 Hb_001369_500 Hb_126711_010--Hb_001369_500 Hb_126711_010--Hb_000062_200 Hb_000313_280 Hb_000313_280 Hb_126711_010--Hb_000313_280 Hb_000649_340 Hb_000649_340 Hb_126711_010--Hb_000649_340 Hb_004109_210 Hb_004109_210 Hb_000062_200--Hb_004109_210 Hb_000062_200--Hb_001369_500 Hb_007382_130 Hb_007382_130 Hb_000062_200--Hb_007382_130 Hb_000062_200--Hb_002759_270 Hb_000164_010 Hb_000164_010 Hb_000062_200--Hb_000164_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.170881 0.25899 0.716161 0.133135 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.202445 0 0

CAGE analysis