Hb_008878_020

Information

Type -
Description -
Location Contig8878: 14930-22864
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07090g
description POPTRDRAFT_861574; hypothetical protein
nr
ID XP_011031097.1
description PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
swissprot
ID Q8W033
description Aldehyde dehydrogenase family 3 member I1, chloroplastic OS=Arabidopsis thaliana GN=ALDH3I1 PE=1 SV=2
trembl
ID B9H4N6
description Aldehyde dehydrogenase OS=Populus trichocarpa GN=POPTR_0005s07090g PE=3 SV=1
Gene Ontology
ID GO:0009941
description aldehyde dehydrogenase family 3 member h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61526: 14927-22864 , PASA_asmbl_61527: 16354-16628 , PASA_asmbl_61528: 22369-22637
cDNA
(Sanger)
(ID:Location)		 027_L04.ab1: 18335-22864

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008878_020 0.0 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
2 Hb_000212_270 0.0809009739 - - calreticulin, putative [Ricinus communis]
3 Hb_002030_090 0.0920606657 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
4 Hb_000697_020 0.0993957669 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
5 Hb_001172_150 0.0994992077 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
6 Hb_001266_130 0.1105956265 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
7 Hb_006478_050 0.1115934406 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
8 Hb_016687_010 0.1126279535 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
9 Hb_001508_030 0.1137225509 - - hypothetical protein VITISV_029808 [Vitis vinifera]
10 Hb_000037_200 0.1177221319 - - RNA binding protein, putative [Ricinus communis]
11 Hb_001579_060 0.1184913532 - - carbonic anhydrase, putative [Ricinus communis]
12 Hb_002276_030 0.1192029393 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
13 Hb_003119_130 0.1203536653 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
14 Hb_000062_050 0.1213783613 - - protein binding protein, putative [Ricinus communis]
15 Hb_171168_010 0.1235998018 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_061126_010 0.1268822148 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
17 Hb_000917_200 0.1274444661 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
18 Hb_003337_020 0.1276711009 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
19 Hb_003141_060 0.1303321965 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
20 Hb_001501_020 0.1311976206 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_008878_020 Hb_008878_020 Hb_000212_270 Hb_000212_270 Hb_008878_020--Hb_000212_270 Hb_002030_090 Hb_002030_090 Hb_008878_020--Hb_002030_090 Hb_000697_020 Hb_000697_020 Hb_008878_020--Hb_000697_020 Hb_001172_150 Hb_001172_150 Hb_008878_020--Hb_001172_150 Hb_001266_130 Hb_001266_130 Hb_008878_020--Hb_001266_130 Hb_006478_050 Hb_006478_050 Hb_008878_020--Hb_006478_050 Hb_000175_200 Hb_000175_200 Hb_000212_270--Hb_000175_200 Hb_000212_270--Hb_000697_020 Hb_001898_100 Hb_001898_100 Hb_000212_270--Hb_001898_100 Hb_000212_270--Hb_001172_150 Hb_003119_130 Hb_003119_130 Hb_000212_270--Hb_003119_130 Hb_093364_010 Hb_093364_010 Hb_002030_090--Hb_093364_010 Hb_001579_060 Hb_001579_060 Hb_002030_090--Hb_001579_060 Hb_000987_020 Hb_000987_020 Hb_002030_090--Hb_000987_020 Hb_000037_200 Hb_000037_200 Hb_002030_090--Hb_000037_200 Hb_029095_010 Hb_029095_010 Hb_002030_090--Hb_029095_010 Hb_061126_010 Hb_061126_010 Hb_000697_020--Hb_061126_010 Hb_016687_010 Hb_016687_010 Hb_000697_020--Hb_016687_010 Hb_000697_020--Hb_001172_150 Hb_063405_010 Hb_063405_010 Hb_000697_020--Hb_063405_010 Hb_000705_010 Hb_000705_010 Hb_000697_020--Hb_000705_010 Hb_001172_150--Hb_003119_130 Hb_001172_150--Hb_061126_010 Hb_001172_150--Hb_000705_010 Hb_000020_020 Hb_000020_020 Hb_001266_130--Hb_000020_020 Hb_001266_130--Hb_000212_270 Hb_000062_050 Hb_000062_050 Hb_001266_130--Hb_000062_050 Hb_001501_020 Hb_001501_020 Hb_001266_130--Hb_001501_020 Hb_000046_430 Hb_000046_430 Hb_001266_130--Hb_000046_430 Hb_001629_120 Hb_001629_120 Hb_006478_050--Hb_001629_120 Hb_000922_160 Hb_000922_160 Hb_006478_050--Hb_000922_160 Hb_006478_050--Hb_000037_200 Hb_002890_160 Hb_002890_160 Hb_006478_050--Hb_002890_160 Hb_000260_410 Hb_000260_410 Hb_006478_050--Hb_000260_410 Hb_001352_030 Hb_001352_030 Hb_006478_050--Hb_001352_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.84446 61.3524 150.396 35.132 1.44502 3.29783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4091 0.525167 0.147197 40.8686 148.429

CAGE analysis