Hb_008887_030

Information

Type -
Description -
Location Contig8887: 32205-32927
Sequence    

Annotation

kegg
ID rcu:RCOM_1537890
description hypothetical protein
nr
ID XP_012092740.1
description PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J912
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08879 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105650448

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008887_030 0.0 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
2 Hb_001953_110 0.1484556817 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
3 Hb_001040_090 0.1511445391 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
4 Hb_131719_010 0.1684611157 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
5 Hb_033312_120 0.1717731841 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
6 Hb_023904_010 0.1741978272 - - -
7 Hb_185274_030 0.176356952 - - hypothetical protein JCGZ_15170 [Jatropha curcas]
8 Hb_061126_010 0.1795803608 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_003349_020 0.1852266693 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
10 Hb_002025_220 0.1853722973 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
11 Hb_000834_170 0.1858301845 - - polygalacturonase, putative [Ricinus communis]
12 Hb_005227_030 0.1915280808 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
13 Hb_002010_030 0.1918632686 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
14 Hb_004374_100 0.191888444 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
15 Hb_004109_140 0.1961820174 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002818_160 0.1962540035 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
17 Hb_002307_120 0.1963111964 - - scab resistance family protein [Populus trichocarpa]
18 Hb_000227_260 0.1968296476 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
19 Hb_000160_080 0.197017772 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM2b-like [Jatropha curcas]
20 Hb_000280_030 0.200751449 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]

Gene co-expression network

sample Hb_008887_030 Hb_008887_030 Hb_001953_110 Hb_001953_110 Hb_008887_030--Hb_001953_110 Hb_001040_090 Hb_001040_090 Hb_008887_030--Hb_001040_090 Hb_131719_010 Hb_131719_010 Hb_008887_030--Hb_131719_010 Hb_033312_120 Hb_033312_120 Hb_008887_030--Hb_033312_120 Hb_023904_010 Hb_023904_010 Hb_008887_030--Hb_023904_010 Hb_185274_030 Hb_185274_030 Hb_008887_030--Hb_185274_030 Hb_001953_110--Hb_023904_010 Hb_001953_110--Hb_001040_090 Hb_005227_030 Hb_005227_030 Hb_001953_110--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_001953_110--Hb_002010_030 Hb_004109_140 Hb_004109_140 Hb_001953_110--Hb_004109_140 Hb_002818_160 Hb_002818_160 Hb_001953_110--Hb_002818_160 Hb_000039_190 Hb_000039_190 Hb_001040_090--Hb_000039_190 Hb_001040_090--Hb_131719_010 Hb_003349_020 Hb_003349_020 Hb_001040_090--Hb_003349_020 Hb_010904_010 Hb_010904_010 Hb_001040_090--Hb_010904_010 Hb_001040_090--Hb_023904_010 Hb_131719_010--Hb_001953_110 Hb_131719_010--Hb_003349_020 Hb_003970_010 Hb_003970_010 Hb_131719_010--Hb_003970_010 Hb_131719_010--Hb_002818_160 Hb_135714_010 Hb_135714_010 Hb_131719_010--Hb_135714_010 Hb_002027_100 Hb_002027_100 Hb_033312_120--Hb_002027_100 Hb_002025_220 Hb_002025_220 Hb_033312_120--Hb_002025_220 Hb_061126_010 Hb_061126_010 Hb_033312_120--Hb_061126_010 Hb_000483_470 Hb_000483_470 Hb_033312_120--Hb_000483_470 Hb_033312_120--Hb_023904_010 Hb_005305_140 Hb_005305_140 Hb_033312_120--Hb_005305_140 Hb_023904_010--Hb_005227_030 Hb_007254_010 Hb_007254_010 Hb_023904_010--Hb_007254_010 Hb_000252_240 Hb_000252_240 Hb_023904_010--Hb_000252_240 Hb_003337_020 Hb_003337_020 Hb_023904_010--Hb_003337_020 Hb_000386_010 Hb_000386_010 Hb_023904_010--Hb_000386_010 Hb_001338_070 Hb_001338_070 Hb_185274_030--Hb_001338_070 Hb_000189_400 Hb_000189_400 Hb_185274_030--Hb_000189_400 Hb_007504_040 Hb_007504_040 Hb_185274_030--Hb_007504_040 Hb_007253_030 Hb_007253_030 Hb_185274_030--Hb_007253_030 Hb_005433_020 Hb_005433_020 Hb_185274_030--Hb_005433_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193844 0.933816 2.04226 0.130305 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0741416 2.05303

CAGE analysis