Hb_008887_040

Information

Type -
Description -
Location Contig8887: 45920-54376
Sequence    

Annotation

kegg
ID tcc:TCM_020284
description Ribonuclease P family protein / Rpp14 family protein isoform 1
nr
ID XP_007034303.1
description Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
swissprot
ID Q6AWV1
description Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1
trembl
ID A0A061ESH1
description Ribonuclease P family protein / Rpp14 family protein isoform 1 OS=Theobroma cacao GN=TCM_020284 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ribonuclease p mrp protein subunit pop5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61538: 46067-53739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008887_040 0.0 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
2 Hb_000270_720 0.1020091644 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
3 Hb_004755_030 0.1129831001 - - EG964 [Manihot glaziovii]
4 Hb_000789_110 0.1192481167 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
5 Hb_000159_070 0.1214738706 - - JHL03K20.4 [Jatropha curcas]
6 Hb_168711_010 0.1223417875 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
7 Hb_002260_020 0.123309352 - - -
8 Hb_000172_420 0.1238023362 - - 60S ribosomal protein L30, putative [Ricinus communis]
9 Hb_009659_020 0.1261091102 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
10 Hb_076693_040 0.1269678086 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
11 Hb_001434_070 0.1278420211 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
12 Hb_000260_200 0.1278751274 - - -
13 Hb_002391_220 0.1290008756 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
14 Hb_001304_140 0.1308688887 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
15 Hb_003988_040 0.1319044306 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
16 Hb_000599_280 0.1327374922 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
17 Hb_000820_130 0.1348329134 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
18 Hb_000069_140 0.1388835713 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
19 Hb_148909_020 0.1401395608 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_000365_080 0.1416195662 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]

Gene co-expression network

sample Hb_008887_040 Hb_008887_040 Hb_000270_720 Hb_000270_720 Hb_008887_040--Hb_000270_720 Hb_004755_030 Hb_004755_030 Hb_008887_040--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_008887_040--Hb_000789_110 Hb_000159_070 Hb_000159_070 Hb_008887_040--Hb_000159_070 Hb_168711_010 Hb_168711_010 Hb_008887_040--Hb_168711_010 Hb_002260_020 Hb_002260_020 Hb_008887_040--Hb_002260_020 Hb_000270_720--Hb_000789_110 Hb_002316_120 Hb_002316_120 Hb_000270_720--Hb_002316_120 Hb_004007_180 Hb_004007_180 Hb_000270_720--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_000270_720--Hb_000599_280 Hb_000820_130 Hb_000820_130 Hb_000270_720--Hb_000820_130 Hb_000270_720--Hb_004755_030 Hb_004755_030--Hb_000789_110 Hb_004755_030--Hb_004007_180 Hb_004755_030--Hb_002316_120 Hb_000975_180 Hb_000975_180 Hb_004755_030--Hb_000975_180 Hb_000789_110--Hb_002316_120 Hb_000300_390 Hb_000300_390 Hb_000789_110--Hb_000300_390 Hb_000789_110--Hb_000820_130 Hb_001377_380 Hb_001377_380 Hb_000789_110--Hb_001377_380 Hb_000789_110--Hb_004007_180 Hb_009384_020 Hb_009384_020 Hb_000159_070--Hb_009384_020 Hb_076693_040 Hb_076693_040 Hb_000159_070--Hb_076693_040 Hb_003988_040 Hb_003988_040 Hb_000159_070--Hb_003988_040 Hb_019516_100 Hb_019516_100 Hb_000159_070--Hb_019516_100 Hb_000172_420 Hb_000172_420 Hb_000159_070--Hb_000172_420 Hb_002897_080 Hb_002897_080 Hb_000159_070--Hb_002897_080 Hb_000635_080 Hb_000635_080 Hb_168711_010--Hb_000635_080 Hb_168711_010--Hb_002260_020 Hb_002248_100 Hb_002248_100 Hb_168711_010--Hb_002248_100 Hb_168711_010--Hb_000172_420 Hb_001434_070 Hb_001434_070 Hb_168711_010--Hb_001434_070 Hb_080477_060 Hb_080477_060 Hb_002260_020--Hb_080477_060 Hb_008705_090 Hb_008705_090 Hb_002260_020--Hb_008705_090 Hb_003349_070 Hb_003349_070 Hb_002260_020--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_002260_020--Hb_030954_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.51245 2.08686 6.72847 9.94473 8.07382 13.7177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.0051 84.8604 15.9902 6.27334 7.53055

CAGE analysis