Hb_008887_050

Information

Type -
Description -
Location Contig8887: 57974-63136
Sequence    

Annotation

kegg
ID pop:POPTR_0012s00420g
description POPTRDRAFT_422381; hypothetical protein
nr
ID XP_012087652.1
description PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
swissprot
ID Q9FLU1
description DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2
trembl
ID A0A067JLM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25172 PE=4 SV=1
Gene Ontology
ID GO:0009330
description dna-binding protein bin4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61540: 57985-63106
cDNA
(Sanger)
(ID:Location)		 033_F20.ab1: 57985-60878 , 042_B04.ab1: 57985-60892

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008887_050 0.0 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
2 Hb_143629_010 0.0545750612 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_031939_010 0.0559994381 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
4 Hb_000923_040 0.0676482133 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
5 Hb_005503_030 0.0712350216 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
6 Hb_000290_020 0.0729495671 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
7 Hb_002007_350 0.0731550688 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
8 Hb_001014_010 0.0746448361 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
9 Hb_000205_120 0.0746576201 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
10 Hb_031527_100 0.0748837659 - - conserved hypothetical protein [Ricinus communis]
11 Hb_171900_100 0.0763135706 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
12 Hb_023001_020 0.0785220279 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
13 Hb_000933_150 0.0806698629 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
14 Hb_000529_080 0.0812048399 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
15 Hb_000666_110 0.0847812458 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
16 Hb_000676_050 0.0849384279 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
17 Hb_000236_320 0.0851786561 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
18 Hb_000141_060 0.0864760355 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
19 Hb_001124_120 0.0875183806 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
20 Hb_006623_020 0.0877012356 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008887_050 Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_008887_050--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_008887_050--Hb_031939_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_000290_020 Hb_000290_020 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_001741_140 Hb_001741_140 Hb_143629_010--Hb_001741_140 Hb_143629_010--Hb_005503_030 Hb_000141_060 Hb_000141_060 Hb_143629_010--Hb_000141_060 Hb_171900_100 Hb_171900_100 Hb_143629_010--Hb_171900_100 Hb_143629_010--Hb_031939_010 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130 Hb_000104_080 Hb_000104_080 Hb_000923_040--Hb_000104_080 Hb_000345_530 Hb_000345_530 Hb_000923_040--Hb_000345_530 Hb_001584_290 Hb_001584_290 Hb_000923_040--Hb_001584_290 Hb_023001_020 Hb_023001_020 Hb_000923_040--Hb_023001_020 Hb_001040_040 Hb_001040_040 Hb_000923_040--Hb_001040_040 Hb_007576_040 Hb_007576_040 Hb_005503_030--Hb_007576_040 Hb_001006_170 Hb_001006_170 Hb_005503_030--Hb_001006_170 Hb_031527_100 Hb_031527_100 Hb_005503_030--Hb_031527_100 Hb_000666_110 Hb_000666_110 Hb_005503_030--Hb_000666_110 Hb_001047_100 Hb_001047_100 Hb_000290_020--Hb_001047_100 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_009265_080 Hb_009265_080 Hb_002007_350--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_002007_350--Hb_008253_010 Hb_004678_060 Hb_004678_060 Hb_002007_350--Hb_004678_060 Hb_007590_080 Hb_007590_080 Hb_002007_350--Hb_007590_080 Hb_000803_300 Hb_000803_300 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.4603 12.2309 20.0678 9.58449 48.2473 34.1053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4273 21.9209 16.4677 13.9699 7.84094

CAGE analysis