Hb_008897_020

Information

Type -
Description -
Location Contig8897: 66224-71992
Sequence    

Annotation

kegg
ID mus:103988307
description LRR receptor-like serine/threonine-protein kinase GSO2
nr
ID XP_009405130.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
swissprot
ID Q9ZPS9
description Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1
trembl
ID A5BS27
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028365 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase fls2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008897_020 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
2 Hb_091913_010 0.0824099215 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
3 Hb_113396_020 0.1129920468 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
4 Hb_007328_010 0.1179458139 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
5 Hb_000563_380 0.1352313729 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]
6 Hb_048538_010 0.1401885702 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
7 Hb_045414_010 0.1434064593 - - unnamed protein product [Vitis vinifera]
8 Hb_141990_050 0.1442188556 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
9 Hb_000522_120 0.1450826975 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
10 Hb_001677_130 0.1465885336 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
11 Hb_031862_150 0.1479138454 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_002849_030 0.1578240354 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
13 Hb_005588_010 0.1606227514 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
14 Hb_022768_010 0.1620995544 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
15 Hb_039650_030 0.1632675906 - - hypothetical protein RCOM_2128750 [Ricinus communis]
16 Hb_006873_030 0.1635054425 - - receptor serine/threonine kinase, putative [Ricinus communis]
17 Hb_001004_010 0.1656190819 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000347_360 0.1673576759 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
19 Hb_012496_010 0.1701067804 - - kinase, putative [Ricinus communis]
20 Hb_000117_110 0.1709220393 - - transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008897_020 Hb_008897_020 Hb_091913_010 Hb_091913_010 Hb_008897_020--Hb_091913_010 Hb_113396_020 Hb_113396_020 Hb_008897_020--Hb_113396_020 Hb_007328_010 Hb_007328_010 Hb_008897_020--Hb_007328_010 Hb_000563_380 Hb_000563_380 Hb_008897_020--Hb_000563_380 Hb_048538_010 Hb_048538_010 Hb_008897_020--Hb_048538_010 Hb_045414_010 Hb_045414_010 Hb_008897_020--Hb_045414_010 Hb_001677_130 Hb_001677_130 Hb_091913_010--Hb_001677_130 Hb_091913_010--Hb_007328_010 Hb_091913_010--Hb_045414_010 Hb_000117_110 Hb_000117_110 Hb_091913_010--Hb_000117_110 Hb_039650_030 Hb_039650_030 Hb_091913_010--Hb_039650_030 Hb_012496_010 Hb_012496_010 Hb_113396_020--Hb_012496_010 Hb_113396_020--Hb_048538_010 Hb_002849_030 Hb_002849_030 Hb_113396_020--Hb_002849_030 Hb_000422_050 Hb_000422_050 Hb_113396_020--Hb_000422_050 Hb_000127_220 Hb_000127_220 Hb_113396_020--Hb_000127_220 Hb_141990_050 Hb_141990_050 Hb_007328_010--Hb_141990_050 Hb_009189_010 Hb_009189_010 Hb_007328_010--Hb_009189_010 Hb_000522_120 Hb_000522_120 Hb_007328_010--Hb_000522_120 Hb_007328_010--Hb_001677_130 Hb_007328_010--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_007328_010--Hb_073870_020 Hb_008931_020 Hb_008931_020 Hb_000563_380--Hb_008931_020 Hb_001031_020 Hb_001031_020 Hb_000563_380--Hb_001031_020 Hb_005588_010 Hb_005588_010 Hb_000563_380--Hb_005588_010 Hb_000563_380--Hb_045414_010 Hb_000635_170 Hb_000635_170 Hb_000563_380--Hb_000635_170 Hb_033153_010 Hb_033153_010 Hb_000563_380--Hb_033153_010 Hb_000347_360 Hb_000347_360 Hb_048538_010--Hb_000347_360 Hb_031862_150 Hb_031862_150 Hb_048538_010--Hb_031862_150 Hb_000227_410 Hb_000227_410 Hb_048538_010--Hb_000227_410 Hb_000904_090 Hb_000904_090 Hb_048538_010--Hb_000904_090 Hb_048538_010--Hb_002849_030 Hb_048538_010--Hb_073870_020 Hb_005643_020 Hb_005643_020 Hb_045414_010--Hb_005643_020 Hb_045414_010--Hb_005588_010 Hb_002864_040 Hb_002864_040 Hb_045414_010--Hb_002864_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.193056 0.0215502 0.00987045 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0179396

CAGE analysis