Hb_008900_010

Information

Type -
Description -
Location Contig8900: 17269-24380
Sequence    

Annotation

kegg
ID mdm:103411789
description uncharacterized LOC103411789
nr
ID XP_012451195.1
description PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2V623
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G053100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61622: 18021-20354 , PASA_asmbl_61623: 18330-20354 , PASA_asmbl_61624: 19356-20354 , PASA_asmbl_61625: 18304-18643 , PASA_asmbl_61626: 21883-22850 , PASA_asmbl_61627: 23711-23982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008900_010 0.0 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
2 Hb_001758_100 0.0566427536 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
3 Hb_000120_470 0.0628073057 - - hypothetical protein VITISV_017372 [Vitis vinifera]
4 Hb_000504_140 0.0714300603 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
5 Hb_002284_240 0.0732929315 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
6 Hb_000146_070 0.0740355029 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
7 Hb_003918_010 0.0747401517 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
8 Hb_005305_080 0.0757250149 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
9 Hb_003615_010 0.0759146924 - - 60S ribosomal protein L8, putative [Ricinus communis]
10 Hb_002473_130 0.0766344963 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
11 Hb_159809_020 0.0769312641 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001006_190 0.0769376792 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
13 Hb_000317_240 0.0776659816 - - PREDICTED: protein DYAD [Jatropha curcas]
14 Hb_000327_190 0.0780986708 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
15 Hb_032202_190 0.0784706026 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
16 Hb_000020_060 0.0794253856 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
17 Hb_000205_160 0.0798259015 - - Peroxisome biogenesis protein 12 [Morus notabilis]
18 Hb_003092_040 0.0818022655 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
19 Hb_000926_250 0.0821592947 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
20 Hb_005618_170 0.0822121371 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]

Gene co-expression network

sample Hb_008900_010 Hb_008900_010 Hb_001758_100 Hb_001758_100 Hb_008900_010--Hb_001758_100 Hb_000120_470 Hb_000120_470 Hb_008900_010--Hb_000120_470 Hb_000504_140 Hb_000504_140 Hb_008900_010--Hb_000504_140 Hb_002284_240 Hb_002284_240 Hb_008900_010--Hb_002284_240 Hb_000146_070 Hb_000146_070 Hb_008900_010--Hb_000146_070 Hb_003918_010 Hb_003918_010 Hb_008900_010--Hb_003918_010 Hb_001758_100--Hb_000120_470 Hb_001758_100--Hb_000504_140 Hb_000465_460 Hb_000465_460 Hb_001758_100--Hb_000465_460 Hb_000317_240 Hb_000317_240 Hb_001758_100--Hb_000317_240 Hb_000757_060 Hb_000757_060 Hb_001758_100--Hb_000757_060 Hb_007416_320 Hb_007416_320 Hb_000120_470--Hb_007416_320 Hb_005054_350 Hb_005054_350 Hb_000120_470--Hb_005054_350 Hb_058999_020 Hb_058999_020 Hb_000120_470--Hb_058999_020 Hb_000058_060 Hb_000058_060 Hb_000120_470--Hb_000058_060 Hb_005539_280 Hb_005539_280 Hb_000504_140--Hb_005539_280 Hb_005779_060 Hb_005779_060 Hb_000504_140--Hb_005779_060 Hb_001633_050 Hb_001633_050 Hb_000504_140--Hb_001633_050 Hb_000504_140--Hb_000317_240 Hb_005618_170 Hb_005618_170 Hb_000504_140--Hb_005618_170 Hb_003599_040 Hb_003599_040 Hb_002284_240--Hb_003599_040 Hb_159809_020 Hb_159809_020 Hb_002284_240--Hb_159809_020 Hb_000926_250 Hb_000926_250 Hb_002284_240--Hb_000926_250 Hb_000007_100 Hb_000007_100 Hb_002284_240--Hb_000007_100 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_000327_190 Hb_000327_190 Hb_002284_240--Hb_000327_190 Hb_000035_180 Hb_000035_180 Hb_000146_070--Hb_000035_180 Hb_002078_350 Hb_002078_350 Hb_000146_070--Hb_002078_350 Hb_000373_070 Hb_000373_070 Hb_000146_070--Hb_000373_070 Hb_000684_470 Hb_000684_470 Hb_000146_070--Hb_000684_470 Hb_156279_020 Hb_156279_020 Hb_000146_070--Hb_156279_020 Hb_003226_140 Hb_003226_140 Hb_000146_070--Hb_003226_140 Hb_172426_040 Hb_172426_040 Hb_003918_010--Hb_172426_040 Hb_000221_160 Hb_000221_160 Hb_003918_010--Hb_000221_160 Hb_001140_370 Hb_001140_370 Hb_003918_010--Hb_001140_370 Hb_002473_130 Hb_002473_130 Hb_003918_010--Hb_002473_130 Hb_000028_590 Hb_000028_590 Hb_003918_010--Hb_000028_590 Hb_008511_120 Hb_008511_120 Hb_003918_010--Hb_008511_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33912 2.04362 2.21099 1.90066 3.07671 4.19129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.69738 4.70709 3.66416 3.24584 1.5066

CAGE analysis