Hb_008921_020

Information

Type -
Description -
Location Contig8921: 78595-88205
Sequence    

Annotation

kegg
ID rcu:RCOM_1111390
description hypothetical protein
nr
ID XP_012066282.1
description PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
swissprot
ID Q5RAZ5
description Non-structural maintenance of chromosomes element 1 homolog OS=Pongo abelii GN=NSMCE1 PE=2 SV=1
trembl
ID A0A067L363
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23843 PE=4 SV=1
Gene Ontology
ID GO:0030915
description non-structural maintenance of chromosomes element 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61696: 78656-87331 , PASA_asmbl_61697: 79103-88147 , PASA_asmbl_61698: 80419-80587 , PASA_asmbl_61699: 81430-81683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008921_020 0.0 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
2 Hb_005063_050 0.0585352776 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
3 Hb_000576_060 0.0597356689 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
4 Hb_000735_040 0.0627076375 - - 60S ribosomal protein L32A [Hevea brasiliensis]
5 Hb_000062_650 0.0635245235 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
6 Hb_000506_070 0.074953285 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
7 Hb_001141_140 0.0775986584 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
8 Hb_006478_160 0.0790224983 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
9 Hb_004223_040 0.0792471601 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
10 Hb_002588_010 0.0814717672 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
11 Hb_143496_010 0.0824604235 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
12 Hb_004157_030 0.0841488207 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
13 Hb_002660_030 0.0843113717 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003226_100 0.0844683302 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
15 Hb_000265_050 0.0854339562 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
16 Hb_000567_410 0.0855173911 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
17 Hb_000134_070 0.0859589384 - - 60S ribosomal protein L6, putative [Ricinus communis]
18 Hb_174865_010 0.0861925505 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
19 Hb_010672_060 0.0865579278 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
20 Hb_003226_210 0.0875394111 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]

Gene co-expression network

sample Hb_008921_020 Hb_008921_020 Hb_005063_050 Hb_005063_050 Hb_008921_020--Hb_005063_050 Hb_000576_060 Hb_000576_060 Hb_008921_020--Hb_000576_060 Hb_000735_040 Hb_000735_040 Hb_008921_020--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_008921_020--Hb_000062_650 Hb_000506_070 Hb_000506_070 Hb_008921_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_008921_020--Hb_001141_140 Hb_003893_050 Hb_003893_050 Hb_005063_050--Hb_003893_050 Hb_010672_060 Hb_010672_060 Hb_005063_050--Hb_010672_060 Hb_000699_160 Hb_000699_160 Hb_005063_050--Hb_000699_160 Hb_000265_050 Hb_000265_050 Hb_005063_050--Hb_000265_050 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010 Hb_000576_060--Hb_000735_040 Hb_001789_050 Hb_001789_050 Hb_000576_060--Hb_001789_050 Hb_000576_060--Hb_000062_650 Hb_000788_010 Hb_000788_010 Hb_000576_060--Hb_000788_010 Hb_000576_060--Hb_001141_140 Hb_174865_010 Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000735_040--Hb_000506_070 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_003018_020 Hb_003018_020 Hb_000735_040--Hb_003018_020 Hb_000062_650--Hb_000506_070 Hb_003641_020 Hb_003641_020 Hb_000062_650--Hb_003641_020 Hb_007044_130 Hb_007044_130 Hb_000062_650--Hb_007044_130 Hb_000062_650--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000062_650--Hb_002588_010 Hb_000506_070--Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_000506_070--Hb_003226_100 Hb_000506_070--Hb_001141_140 Hb_001863_430 Hb_001863_430 Hb_000506_070--Hb_001863_430 Hb_006925_040 Hb_006925_040 Hb_001141_140--Hb_006925_040 Hb_010175_040 Hb_010175_040 Hb_001141_140--Hb_010175_040 Hb_001141_140--Hb_003226_100 Hb_001141_140--Hb_007044_130 Hb_001141_140--Hb_003018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.4753 4.7146 6.47781 9.8842 7.11072 7.77064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8884 36.1037 11.5424 7.70579 4.03694

CAGE analysis