Hb_008948_020

Information

Type -
Description -
Location Contig8948: 12450-20912
Sequence    

Annotation

kegg
ID rcu:RCOM_0904570
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP20745.1
description hypothetical protein JCGZ_21216 [Jatropha curcas]
swissprot
ID Q9SAA6
description Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2 SV=1
trembl
ID A0A067JL81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21216 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61713: 14868-17206 , PASA_asmbl_61714: 11913-17160 , PASA_asmbl_61715: 12001-13237 , PASA_asmbl_61716: 12242-13262 , PASA_asmbl_61717: 18615-18773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_020 0.0 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
2 Hb_002411_110 0.0560331809 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
3 Hb_007413_010 0.0566117739 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
4 Hb_001716_040 0.0566467335 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
5 Hb_006913_020 0.0586710598 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
6 Hb_004435_030 0.0611139166 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
7 Hb_005582_040 0.0618033372 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
8 Hb_001925_060 0.0646031332 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
9 Hb_007904_300 0.0646716566 - - copine, putative [Ricinus communis]
10 Hb_000640_040 0.0678020868 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_004030_080 0.0688680761 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
12 Hb_002830_010 0.0705948592 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
13 Hb_001789_110 0.0717096957 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_033312_040 0.0719606503 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
15 Hb_003117_030 0.0721527043 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
16 Hb_001377_190 0.072320288 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
17 Hb_002272_030 0.0737316888 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
18 Hb_001481_060 0.0744202566 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
19 Hb_027073_020 0.0747123073 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
20 Hb_006100_020 0.0757553616 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]

Gene co-expression network

sample Hb_008948_020 Hb_008948_020 Hb_002411_110 Hb_002411_110 Hb_008948_020--Hb_002411_110 Hb_007413_010 Hb_007413_010 Hb_008948_020--Hb_007413_010 Hb_001716_040 Hb_001716_040 Hb_008948_020--Hb_001716_040 Hb_006913_020 Hb_006913_020 Hb_008948_020--Hb_006913_020 Hb_004435_030 Hb_004435_030 Hb_008948_020--Hb_004435_030 Hb_005582_040 Hb_005582_040 Hb_008948_020--Hb_005582_040 Hb_002890_130 Hb_002890_130 Hb_002411_110--Hb_002890_130 Hb_001925_060 Hb_001925_060 Hb_002411_110--Hb_001925_060 Hb_000317_100 Hb_000317_100 Hb_002411_110--Hb_000317_100 Hb_011819_020 Hb_011819_020 Hb_002411_110--Hb_011819_020 Hb_033312_040 Hb_033312_040 Hb_002411_110--Hb_033312_040 Hb_007413_010--Hb_006913_020 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_007413_010--Hb_001925_060 Hb_001789_110 Hb_001789_110 Hb_007413_010--Hb_001789_110 Hb_000640_040 Hb_000640_040 Hb_001716_040--Hb_000640_040 Hb_001716_040--Hb_005582_040 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_021374_030 Hb_021374_030 Hb_006913_020--Hb_021374_030 Hb_006913_020--Hb_001377_190 Hb_006913_020--Hb_001789_110 Hb_003098_070 Hb_003098_070 Hb_006913_020--Hb_003098_070 Hb_112198_010 Hb_112198_010 Hb_004435_030--Hb_112198_010 Hb_004435_030--Hb_000640_040 Hb_004435_030--Hb_005582_040 Hb_001635_120 Hb_001635_120 Hb_004435_030--Hb_001635_120 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_001304_110 Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_005582_040--Hb_000640_040 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_005582_040--Hb_001635_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16044 4.17831 3.49899 3.98491 1.71093 2.92048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.54731 2.97299 2.93877 4.6091 4.83796

CAGE analysis