Hb_008948_030

Information

Type -
Description -
Location Contig8948: 38636-39087
Sequence    

Annotation

kegg
ID rcu:RCOM_0224470
description hypothetical protein
nr
ID XP_002524507.1
description hypothetical protein RCOM_0224470 [Ricinus communis]
swissprot
ID Q1G3V9
description EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana GN=EPFL8 PE=1 SV=1
trembl
ID B9SET8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0224470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_030 0.0 - - hypothetical protein RCOM_0224470 [Ricinus communis]
2 Hb_003589_010 0.0021658911 - - -
3 Hb_003878_160 0.0040270263 - - conserved hypothetical protein [Ricinus communis]
4 Hb_155103_010 0.0055158929 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_181132_010 0.0184927395 - - -
6 Hb_000757_080 0.0219764713 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
7 Hb_100821_010 0.0337780113 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
8 Hb_002928_080 0.0390383877 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
9 Hb_002392_060 0.0396799529 - - gag/pol protein [Bryonia dioica]
10 Hb_047735_010 0.060275305 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
11 Hb_001433_010 0.0678281568 - - -
12 Hb_020805_020 0.0710209751 - - -
13 Hb_002240_030 0.0805096296 - - -
14 Hb_000046_130 0.0845435422 - - Peroxidase 27 precursor, putative [Ricinus communis]
15 Hb_007809_070 0.136544807 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002495_020 0.1466613563 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
17 Hb_022790_030 0.1555270674 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
18 Hb_001488_050 0.170277304 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
19 Hb_001948_010 0.2900126398 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
20 Hb_008071_030 0.3155161007 - - -

Gene co-expression network

sample Hb_008948_030 Hb_008948_030 Hb_003589_010 Hb_003589_010 Hb_008948_030--Hb_003589_010 Hb_003878_160 Hb_003878_160 Hb_008948_030--Hb_003878_160 Hb_155103_010 Hb_155103_010 Hb_008948_030--Hb_155103_010 Hb_181132_010 Hb_181132_010 Hb_008948_030--Hb_181132_010 Hb_000757_080 Hb_000757_080 Hb_008948_030--Hb_000757_080 Hb_100821_010 Hb_100821_010 Hb_008948_030--Hb_100821_010 Hb_003589_010--Hb_155103_010 Hb_003589_010--Hb_003878_160 Hb_003589_010--Hb_181132_010 Hb_003589_010--Hb_000757_080 Hb_003589_010--Hb_100821_010 Hb_003878_160--Hb_155103_010 Hb_003878_160--Hb_181132_010 Hb_003878_160--Hb_000757_080 Hb_003878_160--Hb_100821_010 Hb_155103_010--Hb_181132_010 Hb_155103_010--Hb_000757_080 Hb_155103_010--Hb_100821_010 Hb_181132_010--Hb_000757_080 Hb_181132_010--Hb_100821_010 Hb_002928_080 Hb_002928_080 Hb_181132_010--Hb_002928_080 Hb_000757_080--Hb_100821_010 Hb_000757_080--Hb_002928_080 Hb_002392_060 Hb_002392_060 Hb_000757_080--Hb_002392_060 Hb_100821_010--Hb_002928_080 Hb_100821_010--Hb_002392_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136136 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.117081 0

CAGE analysis