Hb_008948_080

Information

Type -
Description -
Location Contig8948: 92365-96502
Sequence    

Annotation

kegg
ID rcu:RCOM_0224110
description hypothetical protein
nr
ID XP_012078790.1
description PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
swissprot
ID Q9NVG8
description TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3
trembl
ID B9SET2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0224110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61724: 92548-96377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_080 0.0 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
2 Hb_006970_150 0.1120126388 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
3 Hb_000723_120 0.1187975435 - - PREDICTED: UDP-glycosyltransferase 86A1 [Jatropha curcas]
4 Hb_002518_270 0.1288910229 - - glycogen phosphorylase, putative [Ricinus communis]
5 Hb_000120_070 0.1298498907 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
6 Hb_006501_170 0.1394235842 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
7 Hb_004459_110 0.1403599759 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
8 Hb_000223_050 0.1406029105 - - PREDICTED: endochitinase A-like [Jatropha curcas]
9 Hb_000030_260 0.141322261 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
10 Hb_003556_070 0.1455621379 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_003337_050 0.1484025384 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
12 Hb_073119_010 0.1494081333 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
13 Hb_004007_120 0.1507020782 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
14 Hb_004218_160 0.1563911828 - - NBS-LRR type disease resistance protein [Medicago truncatula]
15 Hb_002085_070 0.1571590078 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000265_020 0.1580152452 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
17 Hb_000252_080 0.1590340882 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
18 Hb_000977_090 0.1590472985 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
19 Hb_000280_110 0.1606558016 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_000075_110 0.1607979896 - - aldo-keto reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008948_080 Hb_008948_080 Hb_006970_150 Hb_006970_150 Hb_008948_080--Hb_006970_150 Hb_000723_120 Hb_000723_120 Hb_008948_080--Hb_000723_120 Hb_002518_270 Hb_002518_270 Hb_008948_080--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_008948_080--Hb_000120_070 Hb_006501_170 Hb_006501_170 Hb_008948_080--Hb_006501_170 Hb_004459_110 Hb_004459_110 Hb_008948_080--Hb_004459_110 Hb_033045_010 Hb_033045_010 Hb_006970_150--Hb_033045_010 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_006970_150--Hb_002518_270 Hb_006970_150--Hb_000120_070 Hb_000265_020 Hb_000265_020 Hb_006970_150--Hb_000265_020 Hb_000030_260 Hb_000030_260 Hb_000723_120--Hb_000030_260 Hb_010578_050 Hb_010578_050 Hb_000723_120--Hb_010578_050 Hb_000723_120--Hb_000120_070 Hb_000008_080 Hb_000008_080 Hb_000723_120--Hb_000008_080 Hb_001514_210 Hb_001514_210 Hb_000723_120--Hb_001514_210 Hb_002518_270--Hb_006501_170 Hb_003337_050 Hb_003337_050 Hb_002518_270--Hb_003337_050 Hb_002518_270--Hb_033045_010 Hb_001946_060 Hb_001946_060 Hb_002518_270--Hb_001946_060 Hb_000836_390 Hb_000836_390 Hb_000120_070--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_000120_070--Hb_007765_140 Hb_008215_010 Hb_008215_010 Hb_000120_070--Hb_008215_010 Hb_000120_070--Hb_000075_110 Hb_003556_070 Hb_003556_070 Hb_000120_070--Hb_003556_070 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140 Hb_011214_140 Hb_011214_140 Hb_006501_170--Hb_011214_140 Hb_000996_200 Hb_000996_200 Hb_004459_110--Hb_000996_200 Hb_002085_070 Hb_002085_070 Hb_004459_110--Hb_002085_070 Hb_000002_100 Hb_000002_100 Hb_004459_110--Hb_000002_100 Hb_006634_080 Hb_006634_080 Hb_004459_110--Hb_006634_080 Hb_157980_010 Hb_157980_010 Hb_004459_110--Hb_157980_010 Hb_004459_110--Hb_006970_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.428959 30.7327 8.47888 4.15687 0.101764 0.146238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.23627 0.495718 1.59955 17.0258 3.25973

CAGE analysis