Hb_008948_100

Information

Type -
Description -
Location Contig8948: 115910-118920
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06880g
description POPTRDRAFT_1080503; hypothetical protein
nr
ID XP_012078788.1
description PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
swissprot
ID O48781
description SPX domain-containing protein 2 OS=Arabidopsis thaliana GN=SPX2 PE=2 SV=1
trembl
ID A0A067KKR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13334 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61727: 116016-118912 , PASA_asmbl_61728: 116271-117446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_100 0.0 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
2 Hb_028487_030 0.1218135609 - - conserved hypothetical protein [Ricinus communis]
3 Hb_029904_030 0.1313771813 - - aspartate aminotransferase, putative [Ricinus communis]
4 Hb_000027_150 0.1322876229 - - mitochondrial carrier protein, putative [Ricinus communis]
5 Hb_002774_050 0.1363167488 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
6 Hb_001357_120 0.1369351152 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
7 Hb_002260_030 0.1395616922 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
8 Hb_003582_040 0.1396419489 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
9 Hb_002027_400 0.1399971523 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
10 Hb_000141_020 0.1528196868 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
11 Hb_000175_030 0.1536222847 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
12 Hb_017987_060 0.1547725029 - - hypothetical protein JCGZ_15971 [Jatropha curcas]
13 Hb_007192_100 0.1561355527 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
14 Hb_000258_330 0.1563308651 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_050806_010 0.1578865101 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
16 Hb_000914_170 0.158153388 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
17 Hb_000123_170 0.1605955363 - - Rab3 [Hevea brasiliensis]
18 Hb_010582_010 0.1622594338 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
19 Hb_002798_050 0.1631044113 - - l-allo-threonine aldolase, putative [Ricinus communis]
20 Hb_000099_130 0.163180895 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]

Gene co-expression network

sample Hb_008948_100 Hb_008948_100 Hb_028487_030 Hb_028487_030 Hb_008948_100--Hb_028487_030 Hb_029904_030 Hb_029904_030 Hb_008948_100--Hb_029904_030 Hb_000027_150 Hb_000027_150 Hb_008948_100--Hb_000027_150 Hb_002774_050 Hb_002774_050 Hb_008948_100--Hb_002774_050 Hb_001357_120 Hb_001357_120 Hb_008948_100--Hb_001357_120 Hb_002260_030 Hb_002260_030 Hb_008948_100--Hb_002260_030 Hb_011671_390 Hb_011671_390 Hb_028487_030--Hb_011671_390 Hb_001616_030 Hb_001616_030 Hb_028487_030--Hb_001616_030 Hb_000680_140 Hb_000680_140 Hb_028487_030--Hb_000680_140 Hb_001218_040 Hb_001218_040 Hb_028487_030--Hb_001218_040 Hb_028486_030 Hb_028486_030 Hb_028487_030--Hb_028486_030 Hb_153112_030 Hb_153112_030 Hb_028487_030--Hb_153112_030 Hb_000111_330 Hb_000111_330 Hb_029904_030--Hb_000111_330 Hb_002798_050 Hb_002798_050 Hb_029904_030--Hb_002798_050 Hb_015807_100 Hb_015807_100 Hb_029904_030--Hb_015807_100 Hb_000684_270 Hb_000684_270 Hb_029904_030--Hb_000684_270 Hb_004871_020 Hb_004871_020 Hb_029904_030--Hb_004871_020 Hb_001633_030 Hb_001633_030 Hb_029904_030--Hb_001633_030 Hb_050806_010 Hb_050806_010 Hb_000027_150--Hb_050806_010 Hb_001687_040 Hb_001687_040 Hb_000027_150--Hb_001687_040 Hb_000012_100 Hb_000012_100 Hb_000027_150--Hb_000012_100 Hb_006573_220 Hb_006573_220 Hb_000027_150--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_000027_150--Hb_000181_300 Hb_004449_200 Hb_004449_200 Hb_000027_150--Hb_004449_200 Hb_002774_050--Hb_050806_010 Hb_007192_100 Hb_007192_100 Hb_002774_050--Hb_007192_100 Hb_001314_040 Hb_001314_040 Hb_002774_050--Hb_001314_040 Hb_000178_120 Hb_000178_120 Hb_002774_050--Hb_000178_120 Hb_002774_050--Hb_001357_120 Hb_010402_050 Hb_010402_050 Hb_002774_050--Hb_010402_050 Hb_001519_030 Hb_001519_030 Hb_001357_120--Hb_001519_030 Hb_000836_130 Hb_000836_130 Hb_001357_120--Hb_000836_130 Hb_001357_120--Hb_002260_030 Hb_000424_210 Hb_000424_210 Hb_001357_120--Hb_000424_210 Hb_000196_080 Hb_000196_080 Hb_001357_120--Hb_000196_080 Hb_001357_120--Hb_001218_040 Hb_002260_030--Hb_002774_050 Hb_000914_170 Hb_000914_170 Hb_002260_030--Hb_000914_170 Hb_000175_030 Hb_000175_030 Hb_002260_030--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_002260_030--Hb_000705_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7186 22.8712 20.0544 20.4332 5.80576 11.0905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.7832 58.0122 59.1437 11.4291 21.0798

CAGE analysis