Hb_008948_130

Information

Type -
Description -
Location Contig8948: 141961-145642
Sequence    

Annotation

kegg
ID rcu:RCOM_0223700
description hypothetical protein
nr
ID XP_002524491.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SES2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0223700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61736: 140455-141509 , PASA_asmbl_61739: 141954-145450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000221_130 0.060168738 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_003033_020 0.0934216288 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
4 Hb_007044_020 0.0968681296 - - unnamed protein product [Vitis vinifera]
5 Hb_001191_060 0.09995697 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
6 Hb_010812_030 0.1000871067 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001310_020 0.1006860039 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
8 Hb_002333_040 0.1007428748 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
9 Hb_001269_480 0.1008437676 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
10 Hb_003186_030 0.101843419 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
11 Hb_000009_470 0.1026010002 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_005483_050 0.1032964155 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006133_010 0.1044869256 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_000589_410 0.1047682335 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
15 Hb_002659_050 0.1055105448 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
16 Hb_003847_070 0.1076519097 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
17 Hb_004807_040 0.108172347 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
18 Hb_000012_370 0.1086202039 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002042_210 0.1101116676 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
20 Hb_123689_010 0.1113991718 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]

Gene co-expression network

sample Hb_008948_130 Hb_008948_130 Hb_000221_130 Hb_000221_130 Hb_008948_130--Hb_000221_130 Hb_003033_020 Hb_003033_020 Hb_008948_130--Hb_003033_020 Hb_007044_020 Hb_007044_020 Hb_008948_130--Hb_007044_020 Hb_001191_060 Hb_001191_060 Hb_008948_130--Hb_001191_060 Hb_010812_030 Hb_010812_030 Hb_008948_130--Hb_010812_030 Hb_001310_020 Hb_001310_020 Hb_008948_130--Hb_001310_020 Hb_001269_480 Hb_001269_480 Hb_000221_130--Hb_001269_480 Hb_000221_130--Hb_007044_020 Hb_000221_130--Hb_010812_030 Hb_000221_130--Hb_001310_020 Hb_000221_130--Hb_001191_060 Hb_006573_240 Hb_006573_240 Hb_003033_020--Hb_006573_240 Hb_003033_020--Hb_001191_060 Hb_003186_030 Hb_003186_030 Hb_003033_020--Hb_003186_030 Hb_010697_020 Hb_010697_020 Hb_003033_020--Hb_010697_020 Hb_003787_030 Hb_003787_030 Hb_003033_020--Hb_003787_030 Hb_000307_100 Hb_000307_100 Hb_003033_020--Hb_000307_100 Hb_011344_030 Hb_011344_030 Hb_007044_020--Hb_011344_030 Hb_003053_080 Hb_003053_080 Hb_007044_020--Hb_003053_080 Hb_007044_020--Hb_010812_030 Hb_000009_470 Hb_000009_470 Hb_007044_020--Hb_000009_470 Hb_007044_020--Hb_001269_480 Hb_001191_060--Hb_001310_020 Hb_001348_160 Hb_001348_160 Hb_001191_060--Hb_001348_160 Hb_001191_060--Hb_001269_480 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_002818_130 Hb_002818_130 Hb_001191_060--Hb_002818_130 Hb_000029_150 Hb_000029_150 Hb_010812_030--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_010812_030--Hb_158597_010 Hb_010812_030--Hb_001269_480 Hb_005483_050 Hb_005483_050 Hb_010812_030--Hb_005483_050 Hb_005736_030 Hb_005736_030 Hb_010812_030--Hb_005736_030 Hb_001310_020--Hb_002818_130 Hb_001310_020--Hb_001269_480 Hb_011381_120 Hb_011381_120 Hb_001310_020--Hb_011381_120 Hb_001310_020--Hb_001348_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.156942 0.256888 26.6612 17.732 0.273806 0.662966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.185388 0.255179 0 2.04897 88.4354

CAGE analysis