Hb_008948_160

Information

Type -
Description -
Location Contig8948: 179425-186396
Sequence    

Annotation

kegg
ID dosa:Os02t0202300-01
description Os02g0202300; Protein of unknown function DUF3414 domain containing protein.
nr
ID XP_009762695.1
description PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B2PGL8
description Nuclear pore complex protein Nup205 OS=Glycine soja GN=glysoja_035929 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup205 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61744: 167458-185674 , PASA_asmbl_61745: 185718-186021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_160 0.0 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
2 Hb_120470_010 0.0994651852 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
3 Hb_000105_030 0.1088468435 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
4 Hb_143986_010 0.1090549698 - - PREDICTED: beta-galactosidase [Jatropha curcas]
5 Hb_000105_020 0.1150622945 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
6 Hb_011791_020 0.1252789281 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
7 Hb_003604_040 0.129693003 - - Serine/threonine-protein kinase sepA [Morus notabilis]
8 Hb_009674_080 0.1357869211 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
9 Hb_007576_210 0.1374712716 - - PREDICTED: protein furry homolog [Jatropha curcas]
10 Hb_000117_070 0.1392847708 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
11 Hb_011828_030 0.141538687 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
12 Hb_000526_060 0.141684397 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
13 Hb_014497_020 0.1419635196 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
14 Hb_020178_060 0.1424569005 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
15 Hb_004126_080 0.1447938764 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
16 Hb_000046_180 0.1489451507 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
17 Hb_011947_050 0.1513835938 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
18 Hb_000949_010 0.1515051843 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
19 Hb_002005_120 0.1516783668 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
20 Hb_000789_240 0.1525356377 - - gamma glutamyl transpeptidases, putative [Ricinus communis]

Gene co-expression network

sample Hb_008948_160 Hb_008948_160 Hb_120470_010 Hb_120470_010 Hb_008948_160--Hb_120470_010 Hb_000105_030 Hb_000105_030 Hb_008948_160--Hb_000105_030 Hb_143986_010 Hb_143986_010 Hb_008948_160--Hb_143986_010 Hb_000105_020 Hb_000105_020 Hb_008948_160--Hb_000105_020 Hb_011791_020 Hb_011791_020 Hb_008948_160--Hb_011791_020 Hb_003604_040 Hb_003604_040 Hb_008948_160--Hb_003604_040 Hb_000526_060 Hb_000526_060 Hb_120470_010--Hb_000526_060 Hb_000117_070 Hb_000117_070 Hb_120470_010--Hb_000117_070 Hb_120470_010--Hb_011791_020 Hb_007818_030 Hb_007818_030 Hb_120470_010--Hb_007818_030 Hb_002687_090 Hb_002687_090 Hb_120470_010--Hb_002687_090 Hb_004032_040 Hb_004032_040 Hb_120470_010--Hb_004032_040 Hb_000631_110 Hb_000631_110 Hb_000105_030--Hb_000631_110 Hb_014497_020 Hb_014497_020 Hb_000105_030--Hb_014497_020 Hb_011609_150 Hb_011609_150 Hb_000105_030--Hb_011609_150 Hb_003211_040 Hb_003211_040 Hb_000105_030--Hb_003211_040 Hb_000175_120 Hb_000175_120 Hb_000105_030--Hb_000175_120 Hb_143986_010--Hb_011791_020 Hb_143986_010--Hb_120470_010 Hb_000327_080 Hb_000327_080 Hb_143986_010--Hb_000327_080 Hb_143986_010--Hb_000105_020 Hb_143986_010--Hb_000117_070 Hb_000105_020--Hb_000105_030 Hb_000162_020 Hb_000162_020 Hb_000105_020--Hb_000162_020 Hb_000105_020--Hb_003604_040 Hb_000046_180 Hb_000046_180 Hb_000105_020--Hb_000046_180 Hb_011791_020--Hb_000526_060 Hb_000123_350 Hb_000123_350 Hb_011791_020--Hb_000123_350 Hb_011791_020--Hb_000117_070 Hb_011791_020--Hb_004032_040 Hb_000574_510 Hb_000574_510 Hb_003604_040--Hb_000574_510 Hb_000949_010 Hb_000949_010 Hb_003604_040--Hb_000949_010 Hb_003604_030 Hb_003604_030 Hb_003604_040--Hb_003604_030 Hb_003604_040--Hb_000117_070 Hb_011671_230 Hb_011671_230 Hb_003604_040--Hb_011671_230 Hb_003604_040--Hb_000046_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23186 6.97467 1.484 1.27251 4.23784 2.57657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.622303 0.380767 0.814678 4.91328 3.11731

CAGE analysis