Hb_008954_010

Information

Type -
Description -
Location Contig8954: 2864-4498
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008954_010 0.0 - - -
2 Hb_001348_110 0.0533334825 - - PREDICTED: esterase-like [Jatropha curcas]
3 Hb_000804_030 0.0865863236 - - Protein C14orf111, putative [Ricinus communis]
4 Hb_001520_020 0.1451625919 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
5 Hb_000011_340 0.1458924871 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
6 Hb_001140_240 0.2134211717 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_005725_110 0.2176840323 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002903_010 0.2245975369 - - 60S ribosomal protein L37-3 [Morus notabilis]
9 Hb_012163_030 0.2297199354 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
10 Hb_000487_280 0.2338825509 - - -
11 Hb_075060_030 0.2402300491 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
12 Hb_000270_800 0.2402300564 - - -
13 Hb_018609_040 0.2402301264 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
14 Hb_034587_030 0.2402621349 - - -
15 Hb_031284_050 0.2410571984 - - -
16 Hb_009954_050 0.2425693044 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
17 Hb_002392_050 0.2528999212 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
18 Hb_000869_110 0.2529618123 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_039112_010 0.2534864278 - - -
20 Hb_003837_020 0.2582501744 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]

Gene co-expression network

sample Hb_008954_010 Hb_008954_010 Hb_001348_110 Hb_001348_110 Hb_008954_010--Hb_001348_110 Hb_000804_030 Hb_000804_030 Hb_008954_010--Hb_000804_030 Hb_001520_020 Hb_001520_020 Hb_008954_010--Hb_001520_020 Hb_000011_340 Hb_000011_340 Hb_008954_010--Hb_000011_340 Hb_001140_240 Hb_001140_240 Hb_008954_010--Hb_001140_240 Hb_005725_110 Hb_005725_110 Hb_008954_010--Hb_005725_110 Hb_001348_110--Hb_000804_030 Hb_001348_110--Hb_001520_020 Hb_001348_110--Hb_000011_340 Hb_075060_030 Hb_075060_030 Hb_001348_110--Hb_075060_030 Hb_000270_800 Hb_000270_800 Hb_001348_110--Hb_000270_800 Hb_002903_010 Hb_002903_010 Hb_000804_030--Hb_002903_010 Hb_031284_050 Hb_031284_050 Hb_000804_030--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_000804_030--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_000804_030--Hb_018609_040 Hb_001520_020--Hb_000011_340 Hb_000487_280 Hb_000487_280 Hb_001520_020--Hb_000487_280 Hb_001520_020--Hb_000804_030 Hb_009954_050 Hb_009954_050 Hb_001520_020--Hb_009954_050 Hb_000011_340--Hb_000487_280 Hb_000011_340--Hb_000804_030 Hb_116349_010 Hb_116349_010 Hb_000011_340--Hb_116349_010 Hb_001140_240--Hb_009954_050 Hb_000500_210 Hb_000500_210 Hb_001140_240--Hb_000500_210 Hb_001140_240--Hb_000804_030 Hb_002260_160 Hb_002260_160 Hb_001140_240--Hb_002260_160 Hb_000012_070 Hb_000012_070 Hb_001140_240--Hb_000012_070 Hb_005725_100 Hb_005725_100 Hb_001140_240--Hb_005725_100 Hb_007477_040 Hb_007477_040 Hb_005725_110--Hb_007477_040 Hb_000504_010 Hb_000504_010 Hb_005725_110--Hb_000504_010 Hb_005725_110--Hb_002903_010 Hb_005725_110--Hb_000804_030 Hb_000853_130 Hb_000853_130 Hb_005725_110--Hb_000853_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0846056 0.133016 0 0.0270995 0

CAGE analysis