Hb_008963_010

Information

Type desease resistance
Description Gene Name: LRR_4
Location Contig8963: 12245-13825
Sequence    

Annotation

kegg
ID rcu:RCOM_0024370
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_011034099.1
description PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SPJ0
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61779: 12241-14232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008963_010 0.0 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
2 Hb_004924_020 0.0688997267 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_004724_310 0.0862869881 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
4 Hb_000714_080 0.1061854789 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
5 Hb_091826_020 0.1084593014 - - hypothetical protein JCGZ_04975 [Jatropha curcas]
6 Hb_000996_100 0.1144442801 - - Nucleotide binding, putative [Theobroma cacao]
7 Hb_158110_010 0.1170887855 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
8 Hb_006916_220 0.1175669686 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
9 Hb_000373_220 0.1196129974 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_000668_220 0.1208607931 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
11 Hb_116103_010 0.1240935524 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
12 Hb_000904_110 0.1246895287 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
13 Hb_053935_010 0.1263937705 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
14 Hb_004241_190 0.1286786019 - - -
15 Hb_000925_110 0.1298098284 - - Spotted leaf protein, putative [Ricinus communis]
16 Hb_000665_090 0.1298730563 - - conserved hypothetical protein [Ricinus communis]
17 Hb_173029_010 0.1334263149 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_096930_010 0.1338350453 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
19 Hb_000731_020 0.1358861295 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
20 Hb_010369_010 0.1366013653 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008963_010 Hb_008963_010 Hb_004924_020 Hb_004924_020 Hb_008963_010--Hb_004924_020 Hb_004724_310 Hb_004724_310 Hb_008963_010--Hb_004724_310 Hb_000714_080 Hb_000714_080 Hb_008963_010--Hb_000714_080 Hb_091826_020 Hb_091826_020 Hb_008963_010--Hb_091826_020 Hb_000996_100 Hb_000996_100 Hb_008963_010--Hb_000996_100 Hb_158110_010 Hb_158110_010 Hb_008963_010--Hb_158110_010 Hb_116103_010 Hb_116103_010 Hb_004924_020--Hb_116103_010 Hb_000904_110 Hb_000904_110 Hb_004924_020--Hb_000904_110 Hb_173029_010 Hb_173029_010 Hb_004924_020--Hb_173029_010 Hb_000668_220 Hb_000668_220 Hb_004924_020--Hb_000668_220 Hb_004924_020--Hb_091826_020 Hb_006916_220 Hb_006916_220 Hb_004724_310--Hb_006916_220 Hb_004724_310--Hb_000996_100 Hb_000925_110 Hb_000925_110 Hb_004724_310--Hb_000925_110 Hb_000731_020 Hb_000731_020 Hb_004724_310--Hb_000731_020 Hb_004724_310--Hb_000714_080 Hb_002066_050 Hb_002066_050 Hb_000714_080--Hb_002066_050 Hb_000665_090 Hb_000665_090 Hb_000714_080--Hb_000665_090 Hb_000714_080--Hb_000925_110 Hb_000714_080--Hb_000904_110 Hb_091826_020--Hb_000665_090 Hb_091826_020--Hb_000714_080 Hb_091826_020--Hb_116103_010 Hb_091826_020--Hb_000904_110 Hb_138705_010 Hb_138705_010 Hb_000996_100--Hb_138705_010 Hb_000996_100--Hb_006916_220 Hb_000996_100--Hb_004924_020 Hb_003968_010 Hb_003968_010 Hb_000996_100--Hb_003968_010 Hb_128460_020 Hb_128460_020 Hb_158110_010--Hb_128460_020 Hb_014361_140 Hb_014361_140 Hb_158110_010--Hb_014361_140 Hb_000061_060 Hb_000061_060 Hb_158110_010--Hb_000061_060 Hb_053935_010 Hb_053935_010 Hb_158110_010--Hb_053935_010 Hb_004241_190 Hb_004241_190 Hb_158110_010--Hb_004241_190 Hb_000373_220 Hb_000373_220 Hb_158110_010--Hb_000373_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0387372 18.1487 11.1891 13.7451 0.08802 0.257269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0294012 0 0 0.479787 0.290971

CAGE analysis