Hb_008983_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig8983: 64359-67780
Sequence    

Annotation

kegg
ID tcc:TCM_045408
description NB-ARC domain-containing disease resistance protein, putative
nr
ID XP_007011201.1
description NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID F6H955
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008983_060 0.0 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
2 Hb_001999_190 0.1503081763 - - GDP-mannose transporter, putative [Ricinus communis]
3 Hb_184705_010 0.2375921685 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
4 Hb_000908_010 0.2546037557 - - Disease resistance protein RGA2, putative [Ricinus communis]
5 Hb_001148_020 0.301150967 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
6 Hb_001491_060 0.317867851 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
7 Hb_000061_380 0.3219549845 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003384_070 0.3224549258 - - PREDICTED: methylesterase 17-like [Populus euphratica]
9 Hb_000315_030 0.3242968415 - - carbohydrate binding protein, putative [Ricinus communis]
10 Hb_000107_320 0.3376812837 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
11 Hb_121304_020 0.3453135844 - - -
12 Hb_000017_150 0.3483035916 - - hypothetical protein POPTR_0001s09780g [Populus trichocarpa]
13 Hb_001091_030 0.358477107 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
14 Hb_030827_050 0.3597858157 - - hypothetical protein CISIN_1g040641mg, partial [Citrus sinensis]
15 Hb_103452_020 0.360982355 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
16 Hb_000803_100 0.3618207859 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
17 Hb_008891_010 0.3635655631 - - hypothetical protein EUGRSUZ_D01145 [Eucalyptus grandis]
18 Hb_004242_070 0.3699496201 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
19 Hb_000402_010 0.3731627921 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
20 Hb_000152_020 0.3736913344 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]

Gene co-expression network

sample Hb_008983_060 Hb_008983_060 Hb_001999_190 Hb_001999_190 Hb_008983_060--Hb_001999_190 Hb_184705_010 Hb_184705_010 Hb_008983_060--Hb_184705_010 Hb_000908_010 Hb_000908_010 Hb_008983_060--Hb_000908_010 Hb_001148_020 Hb_001148_020 Hb_008983_060--Hb_001148_020 Hb_001491_060 Hb_001491_060 Hb_008983_060--Hb_001491_060 Hb_000061_380 Hb_000061_380 Hb_008983_060--Hb_000061_380 Hb_001999_190--Hb_001491_060 Hb_001999_190--Hb_184705_010 Hb_000107_320 Hb_000107_320 Hb_001999_190--Hb_000107_320 Hb_001999_190--Hb_001148_020 Hb_005975_020 Hb_005975_020 Hb_001999_190--Hb_005975_020 Hb_003384_070 Hb_003384_070 Hb_184705_010--Hb_003384_070 Hb_011382_050 Hb_011382_050 Hb_184705_010--Hb_011382_050 Hb_000017_150 Hb_000017_150 Hb_184705_010--Hb_000017_150 Hb_000315_030 Hb_000315_030 Hb_184705_010--Hb_000315_030 Hb_001545_230 Hb_001545_230 Hb_000908_010--Hb_001545_230 Hb_000908_010--Hb_000107_320 Hb_030827_050 Hb_030827_050 Hb_000908_010--Hb_030827_050 Hb_003947_010 Hb_003947_010 Hb_000908_010--Hb_003947_010 Hb_000908_010--Hb_001999_190 Hb_121304_020 Hb_121304_020 Hb_001148_020--Hb_121304_020 Hb_001148_020--Hb_184705_010 Hb_001148_020--Hb_000017_150 Hb_060237_020 Hb_060237_020 Hb_001148_020--Hb_060237_020 Hb_008864_040 Hb_008864_040 Hb_001148_020--Hb_008864_040 Hb_137914_010 Hb_137914_010 Hb_001491_060--Hb_137914_010 Hb_002542_120 Hb_002542_120 Hb_001491_060--Hb_002542_120 Hb_002588_020 Hb_002588_020 Hb_001491_060--Hb_002588_020 Hb_003581_160 Hb_003581_160 Hb_001491_060--Hb_003581_160 Hb_001491_060--Hb_001148_020 Hb_003640_030 Hb_003640_030 Hb_000061_380--Hb_003640_030 Hb_002903_130 Hb_002903_130 Hb_000061_380--Hb_002903_130 Hb_000283_150 Hb_000283_150 Hb_000061_380--Hb_000283_150 Hb_048848_010 Hb_048848_010 Hb_000061_380--Hb_048848_010 Hb_000061_380--Hb_000315_030 Hb_020178_060 Hb_020178_060 Hb_000061_380--Hb_020178_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0428312 0.0268515 0 0.0203748 0.0358025 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.061187 0

CAGE analysis