Hb_008994_010

Information

Type -
Description -
Location Contig8994: 7082-8167
Sequence    

Annotation

kegg
ID tcc:TCM_006009
description Pectin lyase-like superfamily protein isoform 1
nr
ID XP_007041027.1
description Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID O49432
description Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1
trembl
ID A0A061E3K7
description Pectin lyase-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_006009 PE=4 SV=1
Gene Ontology
ID GO:0016829
description polygalacturonase qrt3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008994_010 0.0 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
2 Hb_000739_270 0.1897296286 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
3 Hb_036790_030 0.2009565304 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
4 Hb_000638_260 0.2047851105 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
5 Hb_000321_080 0.2178333924 - - histone H4 [Zea mays]
6 Hb_010998_050 0.2314786677 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
7 Hb_000345_410 0.2319247545 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
8 Hb_025214_120 0.2353070775 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
9 Hb_001135_110 0.2358299624 - - -
10 Hb_000365_170 0.2359033209 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
11 Hb_127743_020 0.2378582454 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
12 Hb_000816_210 0.2396852451 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
13 Hb_002603_090 0.2415454057 - - PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]
14 Hb_000345_130 0.24257569 - - unnamed protein product [Coffea canephora]
15 Hb_005162_130 0.2452607891 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
16 Hb_001507_080 0.2454203138 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
17 Hb_074792_010 0.2455636652 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
18 Hb_000732_030 0.2495831796 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003430_040 0.2516773123 - - spermidine synthase 1, putative [Ricinus communis]
20 Hb_114310_120 0.2518009306 - - PREDICTED: 50S ribosomal protein L31, chloroplastic [Eucalyptus grandis]

Gene co-expression network

sample Hb_008994_010 Hb_008994_010 Hb_000739_270 Hb_000739_270 Hb_008994_010--Hb_000739_270 Hb_036790_030 Hb_036790_030 Hb_008994_010--Hb_036790_030 Hb_000638_260 Hb_000638_260 Hb_008994_010--Hb_000638_260 Hb_000321_080 Hb_000321_080 Hb_008994_010--Hb_000321_080 Hb_010998_050 Hb_010998_050 Hb_008994_010--Hb_010998_050 Hb_000345_410 Hb_000345_410 Hb_008994_010--Hb_000345_410 Hb_000739_270--Hb_036790_030 Hb_004162_230 Hb_004162_230 Hb_000739_270--Hb_004162_230 Hb_000345_130 Hb_000345_130 Hb_000739_270--Hb_000345_130 Hb_008406_100 Hb_008406_100 Hb_000739_270--Hb_008406_100 Hb_000739_270--Hb_010998_050 Hb_036790_030--Hb_010998_050 Hb_036790_030--Hb_000345_130 Hb_002307_020 Hb_002307_020 Hb_036790_030--Hb_002307_020 Hb_002007_040 Hb_002007_040 Hb_036790_030--Hb_002007_040 Hb_000349_230 Hb_000349_230 Hb_036790_030--Hb_000349_230 Hb_000347_140 Hb_000347_140 Hb_000638_260--Hb_000347_140 Hb_074792_010 Hb_074792_010 Hb_000638_260--Hb_074792_010 Hb_028487_120 Hb_028487_120 Hb_000638_260--Hb_028487_120 Hb_000638_260--Hb_000345_410 Hb_000638_260--Hb_008406_100 Hb_003430_040 Hb_003430_040 Hb_000638_260--Hb_003430_040 Hb_000321_080--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_000321_080--Hb_002007_280 Hb_044662_050 Hb_044662_050 Hb_000321_080--Hb_044662_050 Hb_005162_130 Hb_005162_130 Hb_000321_080--Hb_005162_130 Hb_000321_080--Hb_002007_040 Hb_000321_080--Hb_008406_100 Hb_010998_050--Hb_000345_410 Hb_010998_050--Hb_002007_280 Hb_010998_050--Hb_000349_230 Hb_010998_050--Hb_000345_130 Hb_010998_050--Hb_005162_130 Hb_000345_410--Hb_002007_280 Hb_000345_410--Hb_005162_130 Hb_000345_410--Hb_008406_100 Hb_000345_410--Hb_000345_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.409973 0.060106 2.54129 0.703093 0.345468 0.2623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.503507 0.0720066 0 0.0289027 0.222201

CAGE analysis