Hb_009005_050

Information

Type -
Description -
Location Contig9005: 23862-30650
Sequence    

Annotation

kegg
ID rcu:RCOM_0759970
description beta-fructofuranosidase, putative
nr
ID AGU19630.1
description neutral/alkaline invertase 3 [Hevea brasiliensis]
swissprot
ID Q9FK88
description Alkaline/neutral invertase E, chloroplastic OS=Arabidopsis thaliana GN=INVE PE=1 SV=1
trembl
ID W5REH2
description Neutral/alkaline invertase 3 OS=Hevea brasiliensis GN=NIN3 PE=2 SV=1
Gene Ontology
ID GO:0033926
description alkaline neutral invertase cinv1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009005_050 0.0 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
2 Hb_001195_360 0.1540056161 - - PREDICTED: random slug protein 5 [Jatropha curcas]
3 Hb_012799_100 0.1540690063 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
4 Hb_002205_130 0.1596358441 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
5 Hb_000130_110 0.170886232 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
6 Hb_000856_150 0.1799068302 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
7 Hb_005060_020 0.1809566374 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
8 Hb_092107_010 0.1819260003 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000479_080 0.1822321846 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
10 Hb_029510_040 0.1847406821 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
11 Hb_001433_130 0.189169697 - - PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]
12 Hb_002078_440 0.191020782 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
13 Hb_000530_070 0.1918102985 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
14 Hb_002239_060 0.1919638056 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
15 Hb_000140_360 0.194462889 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
16 Hb_001189_050 0.2024675727 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
17 Hb_000069_660 0.2024727856 - - PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Jatropha curcas]
18 Hb_001357_010 0.202860019 - - -
19 Hb_001946_330 0.2032964215 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
20 Hb_011316_020 0.2039569111 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]

Gene co-expression network

sample Hb_009005_050 Hb_009005_050 Hb_001195_360 Hb_001195_360 Hb_009005_050--Hb_001195_360 Hb_012799_100 Hb_012799_100 Hb_009005_050--Hb_012799_100 Hb_002205_130 Hb_002205_130 Hb_009005_050--Hb_002205_130 Hb_000130_110 Hb_000130_110 Hb_009005_050--Hb_000130_110 Hb_000856_150 Hb_000856_150 Hb_009005_050--Hb_000856_150 Hb_005060_020 Hb_005060_020 Hb_009005_050--Hb_005060_020 Hb_001195_360--Hb_000130_110 Hb_003994_190 Hb_003994_190 Hb_001195_360--Hb_003994_190 Hb_002043_050 Hb_002043_050 Hb_001195_360--Hb_002043_050 Hb_001195_360--Hb_002205_130 Hb_001195_360--Hb_012799_100 Hb_012799_100--Hb_002205_130 Hb_000019_060 Hb_000019_060 Hb_012799_100--Hb_000019_060 Hb_011030_020 Hb_011030_020 Hb_012799_100--Hb_011030_020 Hb_001189_050 Hb_001189_050 Hb_012799_100--Hb_001189_050 Hb_003642_050 Hb_003642_050 Hb_012799_100--Hb_003642_050 Hb_168319_030 Hb_168319_030 Hb_012799_100--Hb_168319_030 Hb_002205_130--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_002205_130--Hb_005162_070 Hb_002284_200 Hb_002284_200 Hb_002205_130--Hb_002284_200 Hb_019263_020 Hb_019263_020 Hb_002205_130--Hb_019263_020 Hb_002027_040 Hb_002027_040 Hb_002205_130--Hb_002027_040 Hb_000130_110--Hb_003994_190 Hb_000340_310 Hb_000340_310 Hb_000130_110--Hb_000340_310 Hb_000111_450 Hb_000111_450 Hb_000130_110--Hb_000111_450 Hb_005928_100 Hb_005928_100 Hb_000130_110--Hb_005928_100 Hb_002239_060 Hb_002239_060 Hb_000130_110--Hb_002239_060 Hb_008725_170 Hb_008725_170 Hb_000856_150--Hb_008725_170 Hb_000020_120 Hb_000020_120 Hb_000856_150--Hb_000020_120 Hb_001511_070 Hb_001511_070 Hb_000856_150--Hb_001511_070 Hb_000856_150--Hb_002205_130 Hb_000116_430 Hb_000116_430 Hb_000856_150--Hb_000116_430 Hb_000076_020 Hb_000076_020 Hb_000856_150--Hb_000076_020 Hb_000010_410 Hb_000010_410 Hb_005060_020--Hb_000010_410 Hb_029510_040 Hb_029510_040 Hb_005060_020--Hb_029510_040 Hb_005060_020--Hb_001189_050 Hb_001053_150 Hb_001053_150 Hb_005060_020--Hb_001053_150 Hb_005060_020--Hb_012799_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.353106 0.122729 0.642025 0.307389 0.383721 0.477921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.698882 2.26081 4.53436 0.625218 1.29614

CAGE analysis