Hb_009023_010

Information

Type -
Description -
Location Contig9023: 2647-28525
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01170g
description glycosyl hydrolase family 31 family protein
nr
ID XP_006368273.1
description glycosyl hydrolase family 31 family protein [Populus trichocarpa]
swissprot
ID O74254
description Glucoamylase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=GAM1 PE=1 SV=2
trembl
ID U5GUB5
description Glycosyl hydrolase family 31 family protein OS=Populus trichocarpa GN=POPTR_0001s01170g PE=3 SV=1
Gene Ontology
ID GO:0009507
description neutral alpha-glucosidase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009023_010 0.0 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
2 Hb_000270_380 0.062716682 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
3 Hb_015561_010 0.0651581872 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005762_010 0.0725862234 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
5 Hb_002062_010 0.0734044666 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
6 Hb_012098_160 0.0740922741 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
7 Hb_001512_130 0.0787793936 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
8 Hb_003417_050 0.0885756842 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_128986_010 0.0889861256 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001486_280 0.0890366806 - - hypothetical protein RCOM_1321910 [Ricinus communis]
11 Hb_000103_200 0.089989555 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_009783_010 0.0917773705 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
13 Hb_003032_030 0.0918310689 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
14 Hb_007163_100 0.0925887932 - - BnaC03g52280D [Brassica napus]
15 Hb_000345_550 0.0936991984 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
16 Hb_000903_040 0.0952880533 - - PREDICTED: pirin-like protein [Jatropha curcas]
17 Hb_020375_010 0.0957991461 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
18 Hb_002119_100 0.0967360721 - - cytochrome B561, putative [Ricinus communis]
19 Hb_003339_010 0.098170596 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
20 Hb_007483_090 0.0987541825 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009023_010 Hb_009023_010 Hb_000270_380 Hb_000270_380 Hb_009023_010--Hb_000270_380 Hb_015561_010 Hb_015561_010 Hb_009023_010--Hb_015561_010 Hb_005762_010 Hb_005762_010 Hb_009023_010--Hb_005762_010 Hb_002062_010 Hb_002062_010 Hb_009023_010--Hb_002062_010 Hb_012098_160 Hb_012098_160 Hb_009023_010--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_009023_010--Hb_001512_130 Hb_000270_380--Hb_012098_160 Hb_001486_280 Hb_001486_280 Hb_000270_380--Hb_001486_280 Hb_000270_380--Hb_015561_010 Hb_000270_380--Hb_001512_130 Hb_000336_290 Hb_000336_290 Hb_000270_380--Hb_000336_290 Hb_015561_010--Hb_002062_010 Hb_015561_010--Hb_001512_130 Hb_002119_100 Hb_002119_100 Hb_015561_010--Hb_002119_100 Hb_003417_050 Hb_003417_050 Hb_015561_010--Hb_003417_050 Hb_007483_090 Hb_007483_090 Hb_015561_010--Hb_007483_090 Hb_003339_010 Hb_003339_010 Hb_005762_010--Hb_003339_010 Hb_000230_300 Hb_000230_300 Hb_005762_010--Hb_000230_300 Hb_008054_030 Hb_008054_030 Hb_005762_010--Hb_008054_030 Hb_000103_200 Hb_000103_200 Hb_005762_010--Hb_000103_200 Hb_004137_040 Hb_004137_040 Hb_005762_010--Hb_004137_040 Hb_128986_010 Hb_128986_010 Hb_002062_010--Hb_128986_010 Hb_000017_180 Hb_000017_180 Hb_002062_010--Hb_000017_180 Hb_005656_120 Hb_005656_120 Hb_002062_010--Hb_005656_120 Hb_002062_010--Hb_003417_050 Hb_002062_010--Hb_002119_100 Hb_007163_100 Hb_007163_100 Hb_012098_160--Hb_007163_100 Hb_012098_160--Hb_001486_280 Hb_000904_120 Hb_000904_120 Hb_012098_160--Hb_000904_120 Hb_012098_160--Hb_015561_010 Hb_001512_130--Hb_002062_010 Hb_001512_130--Hb_000017_180 Hb_136408_040 Hb_136408_040 Hb_001512_130--Hb_136408_040 Hb_001512_130--Hb_005656_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1158 2.31335 10.4388 23.7811 0.315835 0.065608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.362695 16.0421

CAGE analysis