Hb_009026_040

Information

Type -
Description -
Location Contig9026: 77884-78366
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08670g
description pathogenesis-related family protein
nr
ID XP_006379156.1
description pathogenesis-related family protein [Populus trichocarpa]
swissprot
ID P09042
description Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3
trembl
ID U5G0F8
description Pathogenesis-related family protein OS=Populus trichocarpa GN=POPTR_0009s08670g PE=4 SV=1
Gene Ontology
ID GO:0005576
description pathogenesis-related protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61958: 77718-78016 , PASA_asmbl_61959: 78024-78406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009026_040 0.0 - - pathogenesis-related family protein [Populus trichocarpa]
2 Hb_001948_040 0.0265225514 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
3 Hb_080238_010 0.0554124844 - - Reticuline oxidase precursor, putative [Ricinus communis]
4 Hb_000828_020 0.0585246763 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_000221_200 0.0662245962 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
6 Hb_002249_180 0.070553383 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
7 Hb_000329_160 0.070800889 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
8 Hb_039363_010 0.0714815288 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_004057_050 0.0721448849 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
10 Hb_003119_110 0.0744684707 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
11 Hb_000712_060 0.0760284072 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
12 Hb_001266_090 0.0764603634 - - -
13 Hb_006925_010 0.076901823 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
14 Hb_000679_070 0.0772340008 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
15 Hb_000563_060 0.0778505829 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
16 Hb_004190_030 0.0811630256 - - unnamed protein product [Vitis vinifera]
17 Hb_002835_020 0.0815042859 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
18 Hb_058620_040 0.0821234218 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
19 Hb_000086_710 0.0846875109 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
20 Hb_003334_020 0.084966767 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]

Gene co-expression network

sample Hb_009026_040 Hb_009026_040 Hb_001948_040 Hb_001948_040 Hb_009026_040--Hb_001948_040 Hb_080238_010 Hb_080238_010 Hb_009026_040--Hb_080238_010 Hb_000828_020 Hb_000828_020 Hb_009026_040--Hb_000828_020 Hb_000221_200 Hb_000221_200 Hb_009026_040--Hb_000221_200 Hb_002249_180 Hb_002249_180 Hb_009026_040--Hb_002249_180 Hb_000329_160 Hb_000329_160 Hb_009026_040--Hb_000329_160 Hb_001948_040--Hb_000828_020 Hb_001948_040--Hb_000221_200 Hb_000712_060 Hb_000712_060 Hb_001948_040--Hb_000712_060 Hb_001948_040--Hb_080238_010 Hb_001948_040--Hb_002249_180 Hb_006925_010 Hb_006925_010 Hb_080238_010--Hb_006925_010 Hb_003334_020 Hb_003334_020 Hb_080238_010--Hb_003334_020 Hb_001266_090 Hb_001266_090 Hb_080238_010--Hb_001266_090 Hb_004057_050 Hb_004057_050 Hb_080238_010--Hb_004057_050 Hb_000684_060 Hb_000684_060 Hb_080238_010--Hb_000684_060 Hb_001266_110 Hb_001266_110 Hb_080238_010--Hb_001266_110 Hb_000828_020--Hb_000221_200 Hb_000828_020--Hb_000712_060 Hb_003073_020 Hb_003073_020 Hb_000828_020--Hb_003073_020 Hb_000828_020--Hb_002249_180 Hb_000699_060 Hb_000699_060 Hb_000221_200--Hb_000699_060 Hb_058620_040 Hb_058620_040 Hb_000221_200--Hb_058620_040 Hb_039363_010 Hb_039363_010 Hb_000221_200--Hb_039363_010 Hb_002249_180--Hb_003073_020 Hb_002249_180--Hb_039363_010 Hb_004267_050 Hb_004267_050 Hb_002249_180--Hb_004267_050 Hb_000329_160--Hb_006925_010 Hb_000329_160--Hb_004057_050 Hb_019392_010 Hb_019392_010 Hb_000329_160--Hb_019392_010 Hb_148986_010 Hb_148986_010 Hb_000329_160--Hb_148986_010 Hb_000329_160--Hb_080238_010 Hb_000086_710 Hb_000086_710 Hb_000329_160--Hb_000086_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.943105 1.99453 1.84668 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142145 0.111664 0 462.57 4.34903

CAGE analysis