Hb_009028_010

Information

Type -
Description -
Location Contig9028: 7198-28187
Sequence    

Annotation

kegg
ID rcu:RCOM_0000910
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_012073428.1
description PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID A0A067KYV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06095 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61961: 8308-28217 , PASA_asmbl_61962: 20196-27843 , PASA_asmbl_61963: 7633-8866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009028_010 0.0 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
2 Hb_144744_010 0.069038407 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
3 Hb_005188_040 0.0708084073 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
4 Hb_001541_250 0.0745171158 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
5 Hb_001935_140 0.0767539799 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
6 Hb_004785_030 0.0847130698 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
7 Hb_007054_040 0.0856351224 - - PREDICTED: protein RST1 [Jatropha curcas]
8 Hb_000105_040 0.0902580771 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
9 Hb_000236_410 0.0912277768 - - Paramyosin, putative [Ricinus communis]
10 Hb_011242_060 0.0939492867 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
11 Hb_002374_290 0.0957521017 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
12 Hb_004648_050 0.0964936541 - - ring finger protein, putative [Ricinus communis]
13 Hb_014834_060 0.0966250046 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
14 Hb_006117_080 0.0969667557 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
15 Hb_002071_050 0.097478713 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
16 Hb_001104_190 0.0976593249 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
17 Hb_002400_140 0.0981577189 - - protein kinase, putative [Ricinus communis]
18 Hb_000406_110 0.0991774884 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
19 Hb_004371_010 0.0992491838 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
20 Hb_000373_100 0.0994084477 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]

Gene co-expression network

sample Hb_009028_010 Hb_009028_010 Hb_144744_010 Hb_144744_010 Hb_009028_010--Hb_144744_010 Hb_005188_040 Hb_005188_040 Hb_009028_010--Hb_005188_040 Hb_001541_250 Hb_001541_250 Hb_009028_010--Hb_001541_250 Hb_001935_140 Hb_001935_140 Hb_009028_010--Hb_001935_140 Hb_004785_030 Hb_004785_030 Hb_009028_010--Hb_004785_030 Hb_007054_040 Hb_007054_040 Hb_009028_010--Hb_007054_040 Hb_000236_410 Hb_000236_410 Hb_144744_010--Hb_000236_410 Hb_144744_010--Hb_001935_140 Hb_004371_010 Hb_004371_010 Hb_144744_010--Hb_004371_010 Hb_000406_110 Hb_000406_110 Hb_144744_010--Hb_000406_110 Hb_003060_090 Hb_003060_090 Hb_144744_010--Hb_003060_090 Hb_002542_130 Hb_002542_130 Hb_005188_040--Hb_002542_130 Hb_005188_040--Hb_004785_030 Hb_001545_150 Hb_001545_150 Hb_005188_040--Hb_001545_150 Hb_011242_060 Hb_011242_060 Hb_005188_040--Hb_011242_060 Hb_000265_090 Hb_000265_090 Hb_005188_040--Hb_000265_090 Hb_001541_250--Hb_007054_040 Hb_001862_110 Hb_001862_110 Hb_001541_250--Hb_001862_110 Hb_001541_250--Hb_001935_140 Hb_002374_290 Hb_002374_290 Hb_001541_250--Hb_002374_290 Hb_000809_170 Hb_000809_170 Hb_001541_250--Hb_000809_170 Hb_000105_040 Hb_000105_040 Hb_001935_140--Hb_000105_040 Hb_001935_140--Hb_007054_040 Hb_000862_040 Hb_000862_040 Hb_001935_140--Hb_000862_040 Hb_003581_170 Hb_003581_170 Hb_001935_140--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_001935_140--Hb_005542_140 Hb_002119_090 Hb_002119_090 Hb_004785_030--Hb_002119_090 Hb_000700_060 Hb_000700_060 Hb_004785_030--Hb_000700_060 Hb_044653_020 Hb_044653_020 Hb_004785_030--Hb_044653_020 Hb_003604_050 Hb_003604_050 Hb_004785_030--Hb_003604_050 Hb_020805_150 Hb_020805_150 Hb_004785_030--Hb_020805_150 Hb_007054_040--Hb_001862_110 Hb_000373_100 Hb_000373_100 Hb_007054_040--Hb_000373_100 Hb_005389_160 Hb_005389_160 Hb_007054_040--Hb_005389_160 Hb_000169_170 Hb_000169_170 Hb_007054_040--Hb_000169_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.29147 12.5569 2.70836 4.6965 4.23989 4.31154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.36843 3.20759 2.28052 3.77196 4.27911

CAGE analysis