Hb_009028_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig9028: 50323-53880
Sequence    

Annotation

kegg
ID tcc:TCM_020318
description NBS type disease resistance protein, putative
nr
ID XP_007034356.1
description NBS type disease resistance protein, putative [Theobroma cacao]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A061ELN7
description NBS type disease resistance protein, putative OS=Theobroma cacao GN=TCM_020318 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61964: 51066-51412 , PASA_asmbl_61967: 53070-53273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009028_030 0.0 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
2 Hb_057451_010 0.0648394793 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
3 Hb_003710_040 0.0820364796 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
4 Hb_000265_250 0.090371609 - - auxilin, putative [Ricinus communis]
5 Hb_003157_010 0.0914889087 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
6 Hb_004899_070 0.0929797071 - - PREDICTED: RRP12-like protein [Jatropha curcas]
7 Hb_011465_030 0.0933825527 - - PREDICTED: B2 protein [Jatropha curcas]
8 Hb_010584_010 0.0977854231 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
9 Hb_001221_160 0.1007097372 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
10 Hb_002849_080 0.1007818336 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
11 Hb_015475_020 0.1010408739 - - importin beta-1, putative [Ricinus communis]
12 Hb_003349_010 0.1023722932 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
13 Hb_000640_200 0.1030374188 - - hypothetical protein RCOM_1346600 [Ricinus communis]
14 Hb_000363_130 0.1037502328 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
15 Hb_000261_290 0.103898958 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
16 Hb_015763_020 0.1046763976 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
17 Hb_000313_340 0.1059502754 - - DNA repair protein xp-E, putative [Ricinus communis]
18 Hb_000264_100 0.1062492201 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002477_150 0.1070002356 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
20 Hb_000098_130 0.1078634737 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]

Gene co-expression network

sample Hb_009028_030 Hb_009028_030 Hb_057451_010 Hb_057451_010 Hb_009028_030--Hb_057451_010 Hb_003710_040 Hb_003710_040 Hb_009028_030--Hb_003710_040 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_003157_010 Hb_003157_010 Hb_009028_030--Hb_003157_010 Hb_004899_070 Hb_004899_070 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_000640_200 Hb_000640_200 Hb_057451_010--Hb_000640_200 Hb_057451_010--Hb_003157_010 Hb_057451_010--Hb_003710_040 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340 Hb_001221_160 Hb_001221_160 Hb_003710_040--Hb_001221_160 Hb_003710_040--Hb_004899_070 Hb_003710_040--Hb_000640_200 Hb_000261_290 Hb_000261_290 Hb_003710_040--Hb_000261_290 Hb_000265_250--Hb_011465_030 Hb_002477_150 Hb_002477_150 Hb_000265_250--Hb_002477_150 Hb_148209_020 Hb_148209_020 Hb_000265_250--Hb_148209_020 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_002849_080 Hb_002849_080 Hb_000265_250--Hb_002849_080 Hb_006501_020 Hb_006501_020 Hb_003157_010--Hb_006501_020 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_011465_030--Hb_002477_150 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_001946_300 Hb_001946_300 Hb_011465_030--Hb_001946_300 Hb_011465_030--Hb_002849_080 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0087 2.60717 0.420034 0.617908 2.21899 1.78043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.4608 0.384595 0.399616 0.949914 0.42228

CAGE analysis