Hb_009049_020

Information

Type -
Description -
Location Contig9049: 74976-88415
Sequence    

Annotation

kegg
ID rcu:RCOM_1731800
description 2-dehydro-3-deoxyphosphooctonate aldolase, putative (EC:2.5.1.55)
nr
ID XP_012072652.1
description PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
swissprot
ID O50044
description 2-dehydro-3-deoxyphosphooctonate aldolase OS=Pisum sativum GN=KDSA PE=2 SV=1
trembl
ID A0A067KNL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06713 PE=3 SV=1
Gene Ontology
ID GO:0005737
description aldolase-type tim barrel family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61991: 75030-90920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009049_020 0.0 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
2 Hb_000208_260 0.0593266877 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
3 Hb_002398_030 0.0697458215 - - amino acid binding protein, putative [Ricinus communis]
4 Hb_000445_050 0.0729411802 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
5 Hb_008120_010 0.0784625771 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
6 Hb_058999_030 0.0784811109 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
7 Hb_003688_090 0.0812119189 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
8 Hb_002876_320 0.0868820229 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
9 Hb_008120_030 0.0881758784 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
10 Hb_002942_060 0.0881806142 - - RNA-binding protein, putative [Ricinus communis]
11 Hb_002273_120 0.0882626361 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
12 Hb_009529_030 0.0905681144 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
13 Hb_001188_060 0.0912398514 - - -
14 Hb_001500_110 0.092523036 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_032050_040 0.0952119701 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
16 Hb_002828_020 0.0957786268 - - protein binding protein, putative [Ricinus communis]
17 Hb_001635_160 0.0958061461 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
18 Hb_007951_040 0.0958331571 - - signal peptidase family protein [Populus trichocarpa]
19 Hb_007592_030 0.096356527 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_017295_010 0.0978116545 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]

Gene co-expression network

sample Hb_009049_020 Hb_009049_020 Hb_000208_260 Hb_000208_260 Hb_009049_020--Hb_000208_260 Hb_002398_030 Hb_002398_030 Hb_009049_020--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_009049_020--Hb_000445_050 Hb_008120_010 Hb_008120_010 Hb_009049_020--Hb_008120_010 Hb_058999_030 Hb_058999_030 Hb_009049_020--Hb_058999_030 Hb_003688_090 Hb_003688_090 Hb_009049_020--Hb_003688_090 Hb_000208_260--Hb_058999_030 Hb_000208_260--Hb_002398_030 Hb_001188_060 Hb_001188_060 Hb_000208_260--Hb_001188_060 Hb_002248_110 Hb_002248_110 Hb_000208_260--Hb_002248_110 Hb_002942_060 Hb_002942_060 Hb_000208_260--Hb_002942_060 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_002398_030--Hb_000445_050 Hb_003549_090 Hb_003549_090 Hb_002398_030--Hb_003549_090 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_007592_030 Hb_007592_030 Hb_000445_050--Hb_007592_030 Hb_000445_050--Hb_008120_030 Hb_000445_050--Hb_002942_060 Hb_000445_050--Hb_058999_030 Hb_011671_040 Hb_011671_040 Hb_008120_010--Hb_011671_040 Hb_000107_200 Hb_000107_200 Hb_008120_010--Hb_000107_200 Hb_002828_020 Hb_002828_020 Hb_008120_010--Hb_002828_020 Hb_002445_120 Hb_002445_120 Hb_008120_010--Hb_002445_120 Hb_007403_060 Hb_007403_060 Hb_008120_010--Hb_007403_060 Hb_058999_030--Hb_002248_110 Hb_017700_010 Hb_017700_010 Hb_058999_030--Hb_017700_010 Hb_058999_030--Hb_003549_090 Hb_058999_030--Hb_007592_030 Hb_010150_020 Hb_010150_020 Hb_003688_090--Hb_010150_020 Hb_007951_040 Hb_007951_040 Hb_003688_090--Hb_007951_040 Hb_002073_190 Hb_002073_190 Hb_003688_090--Hb_002073_190 Hb_003688_090--Hb_000035_110 Hb_003688_090--Hb_002398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.4926 8.7302 18.8597 28.3615 19.4534 28.8298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6334 9.03313 12.5745 14.7142 13.8365

CAGE analysis