Hb_009070_010

Information

Type -
Description -
Location Contig9070: 16085-18765
Sequence    

Annotation

kegg
ID rcu:RCOM_0706750
description Spermidine synthase, putative (EC:2.5.1.16)
nr
ID XP_002516122.1
description Spermidine synthase, putative [Ricinus communis]
swissprot
ID Q9S7X6
description Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1
trembl
ID B9RQV3
description Spermidine synthase, putative OS=Ricinus communis GN=RCOM_0706750 PE=3 SV=1
Gene Ontology
ID GO:0005737
description thermospermine synthase acaulis5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62070: 16587-19593 , PASA_asmbl_62071: 16539-19593
cDNA
(Sanger)
(ID:Location)		 007_D03.ab1: 16539-17520 , 010_N10.ab1: 16539-17291 , 031_D24.ab1: 16539-17563

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009070_010 0.0 - - Spermidine synthase, putative [Ricinus communis]
2 Hb_000227_300 0.086536473 - - conserved hypothetical protein [Ricinus communis]
3 Hb_051408_010 0.0940698078 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_004531_130 0.0999103726 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
5 Hb_000000_320 0.1059689023 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
6 Hb_002626_060 0.1071754728 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
7 Hb_004112_070 0.1089962096 - - -
8 Hb_150573_010 0.1107801921 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
9 Hb_084812_010 0.1126212777 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
10 Hb_001715_060 0.1151511718 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
11 Hb_001022_070 0.1162561812 - - cell wall invertase [Manihot esculenta]
12 Hb_007426_190 0.1164386581 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
13 Hb_059275_010 0.122134682 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
14 Hb_000684_110 0.1249823563 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
15 Hb_000922_050 0.1295427696 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
16 Hb_000861_060 0.1295443654 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
17 Hb_000085_410 0.131530005 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
18 Hb_001638_340 0.1327147041 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000742_290 0.1332860169 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_003427_020 0.1337301016 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009070_010 Hb_009070_010 Hb_000227_300 Hb_000227_300 Hb_009070_010--Hb_000227_300 Hb_051408_010 Hb_051408_010 Hb_009070_010--Hb_051408_010 Hb_004531_130 Hb_004531_130 Hb_009070_010--Hb_004531_130 Hb_000000_320 Hb_000000_320 Hb_009070_010--Hb_000000_320 Hb_002626_060 Hb_002626_060 Hb_009070_010--Hb_002626_060 Hb_004112_070 Hb_004112_070 Hb_009070_010--Hb_004112_070 Hb_007426_190 Hb_007426_190 Hb_000227_300--Hb_007426_190 Hb_000861_060 Hb_000861_060 Hb_000227_300--Hb_000861_060 Hb_000227_300--Hb_051408_010 Hb_000227_300--Hb_004531_130 Hb_097292_010 Hb_097292_010 Hb_000227_300--Hb_097292_010 Hb_001032_080 Hb_001032_080 Hb_051408_010--Hb_001032_080 Hb_001333_030 Hb_001333_030 Hb_051408_010--Hb_001333_030 Hb_051408_010--Hb_007426_190 Hb_051408_010--Hb_002626_060 Hb_000742_290 Hb_000742_290 Hb_004531_130--Hb_000742_290 Hb_010690_010 Hb_010690_010 Hb_004531_130--Hb_010690_010 Hb_050898_030 Hb_050898_030 Hb_004531_130--Hb_050898_030 Hb_004531_130--Hb_000861_060 Hb_020738_010 Hb_020738_010 Hb_004531_130--Hb_020738_010 Hb_001953_010 Hb_001953_010 Hb_000000_320--Hb_001953_010 Hb_000000_320--Hb_004112_070 Hb_005111_020 Hb_005111_020 Hb_000000_320--Hb_005111_020 Hb_001022_070 Hb_001022_070 Hb_000000_320--Hb_001022_070 Hb_003427_020 Hb_003427_020 Hb_000000_320--Hb_003427_020 Hb_004474_070 Hb_004474_070 Hb_000000_320--Hb_004474_070 Hb_001715_060 Hb_001715_060 Hb_002626_060--Hb_001715_060 Hb_002626_060--Hb_003427_020 Hb_124677_090 Hb_124677_090 Hb_002626_060--Hb_124677_090 Hb_001638_340 Hb_001638_340 Hb_002626_060--Hb_001638_340 Hb_000139_390 Hb_000139_390 Hb_004112_070--Hb_000139_390 Hb_004112_070--Hb_005111_020 Hb_000684_110 Hb_000684_110 Hb_004112_070--Hb_000684_110 Hb_001110_060 Hb_001110_060 Hb_004112_070--Hb_001110_060 Hb_004112_070--Hb_001022_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0629291 4.60861 8.64496 16.8345 0.204872 0.0537286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0411448 0 0 0 2.61053

CAGE analysis