Hb_009079_010

Information

Type -
Description -
Location Contig9079: 6015-10512
Sequence    

Annotation

kegg
ID rcu:RCOM_1596070
description peptide transporter, putative
nr
ID BAJ53174.1
description JHL18I08.8 [Jatropha curcas]
swissprot
ID Q9LFB8
description Protein NRT1/ PTR FAMILY 8.2 OS=Arabidopsis thaliana GN=NPF8.2 PE=2 SV=1
trembl
ID E6NU64
description JHL18I08.8 protein OS=Jatropha curcas GN=JHL18I08.8 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62087: 8784-9419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009079_010 0.0 - - JHL18I08.8 [Jatropha curcas]
2 Hb_055276_010 0.0550508894 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
3 Hb_000997_220 0.072766871 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
4 Hb_004884_040 0.0771344814 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
5 Hb_031330_010 0.0804734623 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
6 Hb_012114_090 0.0822071695 - - tubulin beta chain, putative [Ricinus communis]
7 Hb_000318_500 0.0822445163 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000483_340 0.0845460441 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001369_480 0.0849342037 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
10 Hb_000699_220 0.0906931496 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
11 Hb_001856_250 0.0912480338 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
12 Hb_002734_020 0.0923733563 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
13 Hb_000497_030 0.0935043054 - - -
14 Hb_003580_020 0.0939345217 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003754_010 0.0943939917 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
16 Hb_000310_050 0.0946750707 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_001308_010 0.0969693293 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004957_010 0.0971742816 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
19 Hb_006573_120 0.0979090557 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
20 Hb_000729_040 0.0985119697 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]

Gene co-expression network

sample Hb_009079_010 Hb_009079_010 Hb_055276_010 Hb_055276_010 Hb_009079_010--Hb_055276_010 Hb_000997_220 Hb_000997_220 Hb_009079_010--Hb_000997_220 Hb_004884_040 Hb_004884_040 Hb_009079_010--Hb_004884_040 Hb_031330_010 Hb_031330_010 Hb_009079_010--Hb_031330_010 Hb_012114_090 Hb_012114_090 Hb_009079_010--Hb_012114_090 Hb_000318_500 Hb_000318_500 Hb_009079_010--Hb_000318_500 Hb_001369_480 Hb_001369_480 Hb_055276_010--Hb_001369_480 Hb_005357_170 Hb_005357_170 Hb_055276_010--Hb_005357_170 Hb_055276_010--Hb_000997_220 Hb_055276_010--Hb_000318_500 Hb_001433_230 Hb_001433_230 Hb_055276_010--Hb_001433_230 Hb_003754_010 Hb_003754_010 Hb_000997_220--Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_000997_220--Hb_004957_010 Hb_001308_010 Hb_001308_010 Hb_000997_220--Hb_001308_010 Hb_153544_020 Hb_153544_020 Hb_000997_220--Hb_153544_020 Hb_000483_340 Hb_000483_340 Hb_000997_220--Hb_000483_340 Hb_001856_250 Hb_001856_250 Hb_000997_220--Hb_001856_250 Hb_002734_020 Hb_002734_020 Hb_004884_040--Hb_002734_020 Hb_004884_040--Hb_000483_340 Hb_004884_040--Hb_001856_250 Hb_004884_040--Hb_000318_500 Hb_000645_230 Hb_000645_230 Hb_004884_040--Hb_000645_230 Hb_004884_040--Hb_031330_010 Hb_031330_010--Hb_000645_230 Hb_031330_010--Hb_000483_340 Hb_000684_190 Hb_000684_190 Hb_031330_010--Hb_000684_190 Hb_071079_040 Hb_071079_040 Hb_031330_010--Hb_071079_040 Hb_031330_010--Hb_001856_250 Hb_000336_120 Hb_000336_120 Hb_012114_090--Hb_000336_120 Hb_000699_220 Hb_000699_220 Hb_012114_090--Hb_000699_220 Hb_012114_090--Hb_001369_480 Hb_006717_060 Hb_006717_060 Hb_012114_090--Hb_006717_060 Hb_000310_050 Hb_000310_050 Hb_012114_090--Hb_000310_050 Hb_001456_030 Hb_001456_030 Hb_012114_090--Hb_001456_030 Hb_006249_010 Hb_006249_010 Hb_000318_500--Hb_006249_010 Hb_000318_500--Hb_000483_340 Hb_000318_500--Hb_002734_020 Hb_000816_090 Hb_000816_090 Hb_000318_500--Hb_000816_090 Hb_000327_350 Hb_000327_350 Hb_000318_500--Hb_000327_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.021059 0.112825 1.31233 0 0.0102771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.280241

CAGE analysis