Hb_009079_040

Information

Type -
Description -
Location Contig9079: 61189-63988
Sequence    

Annotation

kegg
ID atr:s00030p00044250
description AMTR_s00030p00044250; hypothetical protein
nr
ID CDY48746.1
description BnaA02g30070D [Brassica napus]
swissprot
ID Q76MV0
description Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1
trembl
ID A0A078IFE3
description BnaA02g30070D protein OS=Brassica napus GN=BnaA02g30070D PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62095: 64605-71781
cDNA
(Sanger)
(ID:Location)		 043_P12.ab1: 61020-61673

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009079_040 0.0 - - BnaA02g30070D [Brassica napus]
2 Hb_000011_310 0.1607961308 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
3 Hb_002900_180 0.1879905447 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
4 Hb_000027_280 0.1881900026 - - PREDICTED: uncharacterized protein LOC105642051 [Jatropha curcas]
5 Hb_004147_070 0.1917031047 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
6 Hb_003055_090 0.1986818813 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
7 Hb_001902_200 0.1991708389 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
8 Hb_002498_030 0.2057609247 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000890_120 0.2110762123 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
10 Hb_048384_010 0.2130202994 - - PREDICTED: probable receptor-like protein kinase At2g42960 [Cucumis sativus]
11 Hb_007441_140 0.2131253147 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
12 Hb_000172_090 0.217607678 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
13 Hb_000540_160 0.2247205805 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
14 Hb_001366_170 0.2256895929 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
15 Hb_005253_020 0.2259993071 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
16 Hb_001401_040 0.226225006 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
17 Hb_003875_010 0.2272550084 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
18 Hb_003728_110 0.2276559781 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
19 Hb_000086_290 0.2309503729 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
20 Hb_017439_010 0.2311653453 - - putative actin-97 protein [Linum usitatissimum]

Gene co-expression network

sample Hb_009079_040 Hb_009079_040 Hb_000011_310 Hb_000011_310 Hb_009079_040--Hb_000011_310 Hb_002900_180 Hb_002900_180 Hb_009079_040--Hb_002900_180 Hb_000027_280 Hb_000027_280 Hb_009079_040--Hb_000027_280 Hb_004147_070 Hb_004147_070 Hb_009079_040--Hb_004147_070 Hb_003055_090 Hb_003055_090 Hb_009079_040--Hb_003055_090 Hb_001902_200 Hb_001902_200 Hb_009079_040--Hb_001902_200 Hb_000529_010 Hb_000529_010 Hb_000011_310--Hb_000529_010 Hb_002498_030 Hb_002498_030 Hb_000011_310--Hb_002498_030 Hb_000011_310--Hb_004147_070 Hb_000011_310--Hb_001902_200 Hb_005332_040 Hb_005332_040 Hb_000011_310--Hb_005332_040 Hb_000462_070 Hb_000462_070 Hb_002900_180--Hb_000462_070 Hb_000003_110 Hb_000003_110 Hb_002900_180--Hb_000003_110 Hb_000260_110 Hb_000260_110 Hb_002900_180--Hb_000260_110 Hb_000890_120 Hb_000890_120 Hb_002900_180--Hb_000890_120 Hb_000017_250 Hb_000017_250 Hb_002900_180--Hb_000017_250 Hb_000540_160 Hb_000540_160 Hb_002900_180--Hb_000540_160 Hb_163989_010 Hb_163989_010 Hb_000027_280--Hb_163989_010 Hb_002641_090 Hb_002641_090 Hb_000027_280--Hb_002641_090 Hb_000157_020 Hb_000157_020 Hb_000027_280--Hb_000157_020 Hb_000027_280--Hb_000890_120 Hb_005389_030 Hb_005389_030 Hb_000027_280--Hb_005389_030 Hb_004147_070--Hb_001902_200 Hb_001366_170 Hb_001366_170 Hb_004147_070--Hb_001366_170 Hb_008725_070 Hb_008725_070 Hb_004147_070--Hb_008725_070 Hb_004147_070--Hb_000540_160 Hb_003408_010 Hb_003408_010 Hb_004147_070--Hb_003408_010 Hb_001401_040 Hb_001401_040 Hb_004147_070--Hb_001401_040 Hb_003055_090--Hb_001401_040 Hb_003728_110 Hb_003728_110 Hb_003055_090--Hb_003728_110 Hb_017439_010 Hb_017439_010 Hb_003055_090--Hb_017439_010 Hb_010889_010 Hb_010889_010 Hb_003055_090--Hb_010889_010 Hb_003992_280 Hb_003992_280 Hb_003055_090--Hb_003992_280 Hb_001268_160 Hb_001268_160 Hb_003055_090--Hb_001268_160 Hb_001902_200--Hb_001366_170 Hb_003813_060 Hb_003813_060 Hb_001902_200--Hb_003813_060 Hb_001369_630 Hb_001369_630 Hb_001902_200--Hb_001369_630 Hb_000086_290 Hb_000086_290 Hb_001902_200--Hb_000086_290 Hb_001902_200--Hb_003408_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.327607 1.07781 42.8839 97.3267 0.31658 0.343825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.87138 7.96968 7.73892 10.7068 5.24797

CAGE analysis