Hb_009083_010

Information

Type -
Description -
Location Contig9083: 9986-10510
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14750g
description POPTRDRAFT_563339; Phytosulfokines 3 precursor family protein
nr
ID XP_002310329.1
description Phytosulfokines 3 precursor family protein [Populus trichocarpa]
swissprot
ID Q9M2Y0
description Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2
trembl
ID B9HFY9
description Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=4 SV=1
Gene Ontology
ID GO:0005576
description phytosulfokines 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62098: 9968-10468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009083_010 0.0 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
2 Hb_022206_030 0.081040164 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_174380_010 0.1027437967 - - kinase, putative [Ricinus communis]
4 Hb_006634_080 0.102777812 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
5 Hb_005357_270 0.1139814509 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
6 Hb_000133_060 0.1358936456 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_000252_080 0.1361383685 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
8 Hb_117127_010 0.1361530714 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
9 Hb_000473_080 0.1409072127 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
10 Hb_000996_200 0.1422519535 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
11 Hb_002284_020 0.1442417683 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
12 Hb_073119_010 0.1461358016 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
13 Hb_002272_140 0.146901467 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
14 Hb_002410_010 0.1473392603 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
15 Hb_000003_420 0.1477483075 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_000098_250 0.1481084012 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
17 Hb_133845_010 0.1494435136 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_000110_330 0.1505953492 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
19 Hb_029866_050 0.1512332482 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
20 Hb_012545_080 0.1551374122 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]

Gene co-expression network

sample Hb_009083_010 Hb_009083_010 Hb_022206_030 Hb_022206_030 Hb_009083_010--Hb_022206_030 Hb_174380_010 Hb_174380_010 Hb_009083_010--Hb_174380_010 Hb_006634_080 Hb_006634_080 Hb_009083_010--Hb_006634_080 Hb_005357_270 Hb_005357_270 Hb_009083_010--Hb_005357_270 Hb_000133_060 Hb_000133_060 Hb_009083_010--Hb_000133_060 Hb_000252_080 Hb_000252_080 Hb_009083_010--Hb_000252_080 Hb_022206_030--Hb_174380_010 Hb_117127_010 Hb_117127_010 Hb_022206_030--Hb_117127_010 Hb_022206_030--Hb_000133_060 Hb_041145_010 Hb_041145_010 Hb_022206_030--Hb_041145_010 Hb_009510_050 Hb_009510_050 Hb_022206_030--Hb_009510_050 Hb_174380_010--Hb_006634_080 Hb_174380_010--Hb_117127_010 Hb_000338_030 Hb_000338_030 Hb_174380_010--Hb_000338_030 Hb_174380_010--Hb_000133_060 Hb_012545_080 Hb_012545_080 Hb_174380_010--Hb_012545_080 Hb_000996_200 Hb_000996_200 Hb_006634_080--Hb_000996_200 Hb_157980_010 Hb_157980_010 Hb_006634_080--Hb_157980_010 Hb_006634_080--Hb_005357_270 Hb_000110_330 Hb_000110_330 Hb_006634_080--Hb_000110_330 Hb_005357_270--Hb_012545_080 Hb_005357_270--Hb_000996_200 Hb_005357_270--Hb_000110_330 Hb_005357_270--Hb_174380_010 Hb_007407_010 Hb_007407_010 Hb_000133_060--Hb_007407_010 Hb_002205_260 Hb_002205_260 Hb_000133_060--Hb_002205_260 Hb_000133_060--Hb_000110_330 Hb_000133_060--Hb_012545_080 Hb_019961_010 Hb_019961_010 Hb_000133_060--Hb_019961_010 Hb_000752_020 Hb_000752_020 Hb_000252_080--Hb_000752_020 Hb_004459_110 Hb_004459_110 Hb_000252_080--Hb_004459_110 Hb_006970_150 Hb_006970_150 Hb_000252_080--Hb_006970_150 Hb_006120_170 Hb_006120_170 Hb_000252_080--Hb_006120_170 Hb_004235_060 Hb_004235_060 Hb_000252_080--Hb_004235_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.318106 187.466 50.851 46.8102 0.279118 0.451126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.322 6.86651 0.448668 51.7452 5.18261

CAGE analysis