Hb_009083_030

Information

Type -
Description -
Location Contig9083: 24873-26624
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14760g
description hypothetical protein
nr
ID XP_006380825.1
description hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GB04
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62099: 23402-27029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009083_030 0.0 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
2 Hb_188313_010 0.1154898874 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_182713_020 0.1382176466 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
4 Hb_100137_010 0.1395853409 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
5 Hb_184541_010 0.1426043808 - - PREDICTED: selT-like protein [Jatropha curcas]
6 Hb_017014_020 0.1438401584 - - -
7 Hb_002611_030 0.1514059985 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
8 Hb_121694_010 0.1563393994 - - structural constituent of ribosome, putative [Ricinus communis]
9 Hb_089202_010 0.1636736952 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
10 Hb_183522_010 0.1665294926 - - Far upstream element-binding protein, putative [Ricinus communis]
11 Hb_000053_030 0.1667392422 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
12 Hb_004466_060 0.1718828062 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
13 Hb_010984_040 0.1727383349 - - hypothetical protein M569_17286, partial [Genlisea aurea]
14 Hb_004125_070 0.1765760047 - - Glycolipid transfer protein, putative [Ricinus communis]
15 Hb_000168_010 0.1809996253 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
16 Hb_022614_010 0.1812751354 - - -
17 Hb_006162_020 0.1828650159 - - -
18 Hb_088163_010 0.1843132212 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
19 Hb_013394_100 0.1873595806 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
20 Hb_017014_010 0.1952552865 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009083_030 Hb_009083_030 Hb_188313_010 Hb_188313_010 Hb_009083_030--Hb_188313_010 Hb_182713_020 Hb_182713_020 Hb_009083_030--Hb_182713_020 Hb_100137_010 Hb_100137_010 Hb_009083_030--Hb_100137_010 Hb_184541_010 Hb_184541_010 Hb_009083_030--Hb_184541_010 Hb_017014_020 Hb_017014_020 Hb_009083_030--Hb_017014_020 Hb_002611_030 Hb_002611_030 Hb_009083_030--Hb_002611_030 Hb_188313_010--Hb_182713_020 Hb_001247_030 Hb_001247_030 Hb_188313_010--Hb_001247_030 Hb_188313_010--Hb_184541_010 Hb_001217_010 Hb_001217_010 Hb_188313_010--Hb_001217_010 Hb_188313_010--Hb_100137_010 Hb_013394_100 Hb_013394_100 Hb_182713_020--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_182713_020--Hb_000111_030 Hb_073799_010 Hb_073799_010 Hb_182713_020--Hb_073799_010 Hb_011287_040 Hb_011287_040 Hb_182713_020--Hb_011287_040 Hb_004466_060 Hb_004466_060 Hb_100137_010--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_100137_010--Hb_048702_010 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_122636_010 Hb_122636_010 Hb_100137_010--Hb_122636_010 Hb_100137_010--Hb_001217_010 Hb_004125_070 Hb_004125_070 Hb_184541_010--Hb_004125_070 Hb_011918_010 Hb_011918_010 Hb_184541_010--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_184541_010--Hb_008185_020 Hb_184541_010--Hb_100137_010 Hb_022614_010 Hb_022614_010 Hb_017014_020--Hb_022614_010 Hb_162090_010 Hb_162090_010 Hb_017014_020--Hb_162090_010 Hb_006162_020 Hb_006162_020 Hb_017014_020--Hb_006162_020 Hb_017014_020--Hb_188313_010 Hb_000025_080 Hb_000025_080 Hb_017014_020--Hb_000025_080 Hb_017014_010 Hb_017014_010 Hb_002611_030--Hb_017014_010 Hb_002611_030--Hb_004466_060 Hb_002611_030--Hb_048702_010 Hb_010003_010 Hb_010003_010 Hb_002611_030--Hb_010003_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5646 15.2419 25.9776 259.047 10.1692 110.698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2849 25.7278 16.943 44.1726 15.5861

CAGE analysis