Hb_009083_080

Information

Type -
Description -
Location Contig9083: 43596-44159
Sequence    

Annotation

kegg
ID rcu:RCOM_0581550
description hypothetical protein
nr
ID XP_002525296.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SZG3
description VQ motif-containing protein 29 OS=Arabidopsis thaliana GN=VQ29 PE=2 SV=1
trembl
ID B9SH27
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0581550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009083_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004656_020 0.0673323586 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
3 Hb_003253_060 0.0719281159 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
4 Hb_006418_010 0.084077087 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
5 Hb_181092_010 0.0899467132 - - unnamed protein product [Vitis vinifera]
6 Hb_000077_470 0.0948792758 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
7 Hb_000380_040 0.0955543131 - - bel1 homeotic protein, putative [Ricinus communis]
8 Hb_001376_040 0.1022895434 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
9 Hb_000185_060 0.1037249852 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
10 Hb_001157_150 0.1067559158 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
11 Hb_000031_130 0.1110485962 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
12 Hb_001953_130 0.1139295831 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
13 Hb_000236_360 0.1193063804 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
14 Hb_002677_010 0.122194339 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
15 Hb_008616_020 0.1242986551 - - unnamed protein product [Vitis vinifera]
16 Hb_033006_040 0.1252851555 - - sulfate transporter, putative [Ricinus communis]
17 Hb_032443_030 0.127676256 - - PREDICTED: protein SRG1-like [Jatropha curcas]
18 Hb_001269_020 0.1292191874 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
19 Hb_000116_390 0.1292735478 - - Mlo protein [Hevea brasiliensis]
20 Hb_002019_030 0.1300612103 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_009083_080 Hb_009083_080 Hb_004656_020 Hb_004656_020 Hb_009083_080--Hb_004656_020 Hb_003253_060 Hb_003253_060 Hb_009083_080--Hb_003253_060 Hb_006418_010 Hb_006418_010 Hb_009083_080--Hb_006418_010 Hb_181092_010 Hb_181092_010 Hb_009083_080--Hb_181092_010 Hb_000077_470 Hb_000077_470 Hb_009083_080--Hb_000077_470 Hb_000380_040 Hb_000380_040 Hb_009083_080--Hb_000380_040 Hb_004656_020--Hb_003253_060 Hb_001376_040 Hb_001376_040 Hb_004656_020--Hb_001376_040 Hb_000031_130 Hb_000031_130 Hb_004656_020--Hb_000031_130 Hb_032443_030 Hb_032443_030 Hb_004656_020--Hb_032443_030 Hb_001114_210 Hb_001114_210 Hb_004656_020--Hb_001114_210 Hb_047690_010 Hb_047690_010 Hb_003253_060--Hb_047690_010 Hb_001487_020 Hb_001487_020 Hb_003253_060--Hb_001487_020 Hb_135811_020 Hb_135811_020 Hb_003253_060--Hb_135811_020 Hb_150643_010 Hb_150643_010 Hb_003253_060--Hb_150643_010 Hb_006418_010--Hb_004656_020 Hb_002019_030 Hb_002019_030 Hb_006418_010--Hb_002019_030 Hb_006418_010--Hb_003253_060 Hb_006418_010--Hb_001376_040 Hb_000185_060 Hb_000185_060 Hb_006418_010--Hb_000185_060 Hb_000856_350 Hb_000856_350 Hb_181092_010--Hb_000856_350 Hb_156949_010 Hb_156949_010 Hb_181092_010--Hb_156949_010 Hb_002677_010 Hb_002677_010 Hb_181092_010--Hb_002677_010 Hb_002986_110 Hb_002986_110 Hb_181092_010--Hb_002986_110 Hb_181092_010--Hb_000185_060 Hb_013654_010 Hb_013654_010 Hb_181092_010--Hb_013654_010 Hb_000077_470--Hb_003253_060 Hb_001157_150 Hb_001157_150 Hb_000077_470--Hb_001157_150 Hb_001021_140 Hb_001021_140 Hb_000077_470--Hb_001021_140 Hb_005081_080 Hb_005081_080 Hb_000077_470--Hb_005081_080 Hb_000077_470--Hb_006418_010 Hb_000236_360 Hb_000236_360 Hb_000380_040--Hb_000236_360 Hb_000380_040--Hb_001157_150 Hb_000380_040--Hb_181092_010 Hb_000380_040--Hb_000185_060 Hb_033006_040 Hb_033006_040 Hb_000380_040--Hb_033006_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.48175 0 0.145441 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.43482 0

CAGE analysis