Hb_009093_020

Information

Type -
Description -
Location Contig9093: 8374-8925
Sequence    

Annotation

kegg
ID rcu:RCOM_0862830
description hypothetical protein
nr
ID XP_012082180.1
description PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SA76
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0862830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62106: 8340-8959
cDNA
(Sanger)
(ID:Location)		 033_C15.ab1: 8340-8945 , 053_G20.ab1: 8340-8945

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009093_020 0.0 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
2 Hb_000841_040 0.0412099327 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
3 Hb_011381_120 0.0489952673 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
4 Hb_001517_060 0.0555077801 - - phosphoribulose kinase, putative [Ricinus communis]
5 Hb_001289_050 0.0594109194 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
6 Hb_000282_100 0.0625038444 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
7 Hb_003090_050 0.0679765598 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
8 Hb_000029_390 0.0693502333 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
9 Hb_002289_070 0.0695468908 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
10 Hb_000111_460 0.0735667009 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
11 Hb_001832_180 0.077943673 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
12 Hb_004631_020 0.0781886363 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
13 Hb_002995_060 0.0808474608 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
14 Hb_004712_230 0.0843300948 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
15 Hb_000009_470 0.085527137 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
16 Hb_000482_030 0.0868614794 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
17 Hb_002534_090 0.0885972986 - - geranylgeranyl reductase [Hevea brasiliensis]
18 Hb_004920_080 0.0917250327 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
19 Hb_001135_170 0.092435125 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
20 Hb_001310_020 0.0929334656 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009093_020 Hb_009093_020 Hb_000841_040 Hb_000841_040 Hb_009093_020--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_009093_020--Hb_011381_120 Hb_001517_060 Hb_001517_060 Hb_009093_020--Hb_001517_060 Hb_001289_050 Hb_001289_050 Hb_009093_020--Hb_001289_050 Hb_000282_100 Hb_000282_100 Hb_009093_020--Hb_000282_100 Hb_003090_050 Hb_003090_050 Hb_009093_020--Hb_003090_050 Hb_000841_040--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_000841_040--Hb_000111_460 Hb_000841_040--Hb_011381_120 Hb_001832_180 Hb_001832_180 Hb_000841_040--Hb_001832_180 Hb_004631_020 Hb_004631_020 Hb_000841_040--Hb_004631_020 Hb_002818_130 Hb_002818_130 Hb_011381_120--Hb_002818_130 Hb_011381_120--Hb_000111_460 Hb_001310_020 Hb_001310_020 Hb_011381_120--Hb_001310_020 Hb_011381_120--Hb_003090_050 Hb_002289_070 Hb_002289_070 Hb_001517_060--Hb_002289_070 Hb_002534_090 Hb_002534_090 Hb_001517_060--Hb_002534_090 Hb_001579_050 Hb_001579_050 Hb_001517_060--Hb_001579_050 Hb_000029_390 Hb_000029_390 Hb_001517_060--Hb_000029_390 Hb_000009_470 Hb_000009_470 Hb_001517_060--Hb_000009_470 Hb_004807_040 Hb_004807_040 Hb_001289_050--Hb_004807_040 Hb_001289_050--Hb_000282_100 Hb_001289_050--Hb_000841_040 Hb_001289_050--Hb_011381_120 Hb_001289_050--Hb_001579_050 Hb_000282_100--Hb_000029_390 Hb_000282_100--Hb_000841_040 Hb_000282_100--Hb_004631_020 Hb_000282_100--Hb_001832_180 Hb_003090_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_003090_050--Hb_000923_030 Hb_001287_070 Hb_001287_070 Hb_003090_050--Hb_001287_070 Hb_008748_050 Hb_008748_050 Hb_003090_050--Hb_008748_050 Hb_000010_380 Hb_000010_380 Hb_003090_050--Hb_000010_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.59242 24.312 9.42124 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.22547 96.2025

CAGE analysis