Hb_009111_020

Information

Type -
Description -
Location Contig9111: 16773-22935
Sequence    

Annotation

kegg
ID rcu:RCOM_0422680
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012074258.1
description PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
swissprot
ID Q9ZV15
description Calcium-dependent protein kinase 20 OS=Arabidopsis thaliana GN=CPK20 PE=3 SV=1
trembl
ID A0A067KUW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08714 PE=4 SV=1
Gene Ontology
ID GO:0004672
description calcium-dependent protein kinase 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62126: 16781-23171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009111_020 0.0 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
2 Hb_000300_700 0.1070128726 - - PREDICTED: adenylyl-sulfate kinase 3 [Jatropha curcas]
3 Hb_003549_080 0.1413620997 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
4 Hb_002333_070 0.1457554147 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
5 Hb_000122_190 0.1568578482 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
6 Hb_000256_040 0.1600320742 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
7 Hb_001486_010 0.1662665764 - - adenylsulfate kinase, putative [Ricinus communis]
8 Hb_004965_110 0.1677149044 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
9 Hb_007811_040 0.1679140653 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
10 Hb_001486_250 0.1689017586 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
11 Hb_000062_330 0.1723437714 - - unknown [Lotus japonicus]
12 Hb_002671_090 0.1742539861 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
13 Hb_001904_050 0.175869998 - - alpha-tubulin 1 [Hevea brasiliensis]
14 Hb_000796_010 0.1761919845 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
15 Hb_000086_140 0.1768087648 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
16 Hb_002184_090 0.1772987328 - - DNA binding protein, putative [Ricinus communis]
17 Hb_001959_010 0.1777267332 - - myosin XI, putative [Ricinus communis]
18 Hb_001004_150 0.1792534565 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
19 Hb_002909_020 0.1806734244 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
20 Hb_000832_190 0.1808323596 - - Rab3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_009111_020 Hb_009111_020 Hb_000300_700 Hb_000300_700 Hb_009111_020--Hb_000300_700 Hb_003549_080 Hb_003549_080 Hb_009111_020--Hb_003549_080 Hb_002333_070 Hb_002333_070 Hb_009111_020--Hb_002333_070 Hb_000122_190 Hb_000122_190 Hb_009111_020--Hb_000122_190 Hb_000256_040 Hb_000256_040 Hb_009111_020--Hb_000256_040 Hb_001486_010 Hb_001486_010 Hb_009111_020--Hb_001486_010 Hb_000008_400 Hb_000008_400 Hb_000300_700--Hb_000008_400 Hb_002671_090 Hb_002671_090 Hb_000300_700--Hb_002671_090 Hb_004931_110 Hb_004931_110 Hb_000300_700--Hb_004931_110 Hb_065525_120 Hb_065525_120 Hb_000300_700--Hb_065525_120 Hb_004965_110 Hb_004965_110 Hb_000300_700--Hb_004965_110 Hb_007441_080 Hb_007441_080 Hb_003549_080--Hb_007441_080 Hb_003549_080--Hb_004965_110 Hb_001904_050 Hb_001904_050 Hb_003549_080--Hb_001904_050 Hb_011671_260 Hb_011671_260 Hb_003549_080--Hb_011671_260 Hb_027506_040 Hb_027506_040 Hb_003549_080--Hb_027506_040 Hb_000566_050 Hb_000566_050 Hb_002333_070--Hb_000566_050 Hb_021576_150 Hb_021576_150 Hb_002333_070--Hb_021576_150 Hb_002333_070--Hb_027506_040 Hb_002333_070--Hb_000122_190 Hb_010872_070 Hb_010872_070 Hb_002333_070--Hb_010872_070 Hb_002333_070--Hb_004965_110 Hb_001900_140 Hb_001900_140 Hb_000122_190--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000122_190--Hb_001587_180 Hb_007002_020 Hb_007002_020 Hb_000122_190--Hb_007002_020 Hb_000122_190--Hb_004965_110 Hb_000122_190--Hb_027506_040 Hb_000003_780 Hb_000003_780 Hb_000122_190--Hb_000003_780 Hb_007533_040 Hb_007533_040 Hb_000256_040--Hb_007533_040 Hb_000197_250 Hb_000197_250 Hb_000256_040--Hb_000197_250 Hb_005245_100 Hb_005245_100 Hb_000256_040--Hb_005245_100 Hb_000140_090 Hb_000140_090 Hb_000256_040--Hb_000140_090 Hb_001357_200 Hb_001357_200 Hb_000256_040--Hb_001357_200 Hb_000925_130 Hb_000925_130 Hb_000256_040--Hb_000925_130 Hb_075247_010 Hb_075247_010 Hb_001486_010--Hb_075247_010 Hb_000788_060 Hb_000788_060 Hb_001486_010--Hb_000788_060 Hb_000239_020 Hb_000239_020 Hb_001486_010--Hb_000239_020 Hb_001221_330 Hb_001221_330 Hb_001486_010--Hb_001221_330 Hb_007262_030 Hb_007262_030 Hb_001486_010--Hb_007262_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.889376 0.708473 3.60849 2.28586 0.412715 0.386225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40852 1.8823 3.40342 0.34291 1.52466

CAGE analysis