Hb_009111_050

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig9111: 46796-52504
Sequence    

Annotation

kegg
ID tcc:TCM_025073
description Pentatricopeptide repeat (PPR) superfamily protein
nr
ID XP_011042533.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
swissprot
ID Q9FG16
description Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=3 SV=1
trembl
ID A0A061EXA8
description Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_025073 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g06540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62132: 47778-48056 , PASA_asmbl_62133: 49143-51685 , PASA_asmbl_62134: 50560-50956 , PASA_asmbl_62135: 51747-52253 , PASA_asmbl_62136: 52332-52523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009111_050 0.0 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
2 Hb_028872_140 0.0554541226 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
3 Hb_033642_010 0.0559693898 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
4 Hb_001030_120 0.058306355 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
5 Hb_001454_210 0.0584940285 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
6 Hb_000190_140 0.060364355 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
7 Hb_015306_020 0.0643584085 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
8 Hb_005062_070 0.0647847262 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
9 Hb_000421_260 0.0676374689 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
10 Hb_039837_010 0.0696582968 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
11 Hb_007951_050 0.0698179524 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000032_570 0.0714847414 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
13 Hb_002890_340 0.0734013216 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
14 Hb_003777_270 0.0749678654 - - 60S ribosomal protein L3B [Hevea brasiliensis]
15 Hb_003642_060 0.0766489656 - - hypothetical protein RCOM_1189860 [Ricinus communis]
16 Hb_000062_240 0.0771249284 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
17 Hb_011310_070 0.077152068 - - ADP,ATP carrier protein, putative [Ricinus communis]
18 Hb_028639_060 0.0779072253 - - transporter, putative [Ricinus communis]
19 Hb_015001_020 0.0779692827 - - PREDICTED: la-related protein 6B [Jatropha curcas]
20 Hb_002811_360 0.0796246008 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]

Gene co-expression network

sample Hb_009111_050 Hb_009111_050 Hb_028872_140 Hb_028872_140 Hb_009111_050--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_009111_050--Hb_033642_010 Hb_001030_120 Hb_001030_120 Hb_009111_050--Hb_001030_120 Hb_001454_210 Hb_001454_210 Hb_009111_050--Hb_001454_210 Hb_000190_140 Hb_000190_140 Hb_009111_050--Hb_000190_140 Hb_015306_020 Hb_015306_020 Hb_009111_050--Hb_015306_020 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_028872_140--Hb_033642_010 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_028872_140--Hb_015306_020 Hb_002030_030 Hb_002030_030 Hb_033642_010--Hb_002030_030 Hb_001720_050 Hb_001720_050 Hb_033642_010--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_033642_010--Hb_000062_240 Hb_003777_270 Hb_003777_270 Hb_033642_010--Hb_003777_270 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_001030_120--Hb_028872_140 Hb_001454_210--Hb_015306_020 Hb_001454_210--Hb_005062_070 Hb_001454_210--Hb_002811_360 Hb_001454_210--Hb_001030_120 Hb_000754_060 Hb_000754_060 Hb_000190_140--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_000190_140--Hb_000120_950 Hb_000190_140--Hb_001454_210 Hb_000190_140--Hb_005062_070 Hb_000190_140--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_015306_020--Hb_002890_340 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_004046_010 Hb_004046_010 Hb_015306_020--Hb_004046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.38663 2.626 2.05814 1.80841 6.29471 10.6612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.80037 6.47095 8.09481 4.16403 1.93211

CAGE analysis