Hb_009113_010

Information

Type -
Description -
Location Contig9113: 10211-11757
Sequence    

Annotation

kegg
ID rcu:RCOM_1444730
description Chalcone synthase, putative (EC:2.3.1.74)
nr
ID XP_002512817.1
description Chalcone synthase, putative [Ricinus communis]
swissprot
ID P48385
description Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2
trembl
ID B9RGV8
description Chalcone synthase, putative OS=Ricinus communis GN=RCOM_1444730 PE=3 SV=1
Gene Ontology
ID GO:0005634
description chalcone synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62140: 10708-10937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009113_010 0.0 - - Chalcone synthase, putative [Ricinus communis]
2 Hb_188681_010 0.0439723407 - - hypothetical protein POPTR_0490s00210g, partial [Populus trichocarpa]
3 Hb_000207_340 0.1297985639 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
4 Hb_000138_080 0.1349004947 - - conserved hypothetical protein [Ricinus communis]
5 Hb_105134_010 0.14077225 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
6 Hb_156499_010 0.1410803639 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
7 Hb_144783_010 0.1661680511 - - glutathione s-transferase, putative [Ricinus communis]
8 Hb_003177_080 0.179312135 - - hypothetical protein L484_016032 [Morus notabilis]
9 Hb_004316_130 0.1799330668 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
10 Hb_003189_020 0.1870052374 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
11 Hb_002475_070 0.1905627098 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
12 Hb_046770_010 0.1946342368 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000161_250 0.1964817505 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
14 Hb_001360_060 0.1973039351 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
15 Hb_000116_550 0.2033832802 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000797_030 0.2040822005 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
17 Hb_109673_010 0.2053024702 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_003097_200 0.2063476446 - - conserved hypothetical protein [Ricinus communis]
19 Hb_036069_020 0.2071063187 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
20 Hb_003893_100 0.2088998874 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]

Gene co-expression network

sample Hb_009113_010 Hb_009113_010 Hb_188681_010 Hb_188681_010 Hb_009113_010--Hb_188681_010 Hb_000207_340 Hb_000207_340 Hb_009113_010--Hb_000207_340 Hb_000138_080 Hb_000138_080 Hb_009113_010--Hb_000138_080 Hb_105134_010 Hb_105134_010 Hb_009113_010--Hb_105134_010 Hb_156499_010 Hb_156499_010 Hb_009113_010--Hb_156499_010 Hb_144783_010 Hb_144783_010 Hb_009113_010--Hb_144783_010 Hb_188681_010--Hb_105134_010 Hb_188681_010--Hb_000207_340 Hb_188681_010--Hb_144783_010 Hb_188681_010--Hb_156499_010 Hb_000161_250 Hb_000161_250 Hb_188681_010--Hb_000161_250 Hb_003177_080 Hb_003177_080 Hb_000207_340--Hb_003177_080 Hb_000797_030 Hb_000797_030 Hb_000207_340--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_000207_340--Hb_003097_200 Hb_000207_340--Hb_156499_010 Hb_000911_050 Hb_000911_050 Hb_000207_340--Hb_000911_050 Hb_036069_020 Hb_036069_020 Hb_000207_340--Hb_036069_020 Hb_000138_080--Hb_156499_010 Hb_000138_080--Hb_003177_080 Hb_000138_080--Hb_000207_340 Hb_000138_080--Hb_188681_010 Hb_001360_060 Hb_001360_060 Hb_000138_080--Hb_001360_060 Hb_003189_020 Hb_003189_020 Hb_105134_010--Hb_003189_020 Hb_046770_010 Hb_046770_010 Hb_105134_010--Hb_046770_010 Hb_005550_040 Hb_005550_040 Hb_105134_010--Hb_005550_040 Hb_094439_030 Hb_094439_030 Hb_105134_010--Hb_094439_030 Hb_105134_010--Hb_156499_010 Hb_026284_010 Hb_026284_010 Hb_105134_010--Hb_026284_010 Hb_156499_010--Hb_003177_080 Hb_156499_010--Hb_001360_060 Hb_002475_070 Hb_002475_070 Hb_144783_010--Hb_002475_070 Hb_000200_180 Hb_000200_180 Hb_144783_010--Hb_000200_180 Hb_004316_130 Hb_004316_130 Hb_144783_010--Hb_004316_130 Hb_000297_180 Hb_000297_180 Hb_144783_010--Hb_000297_180 Hb_002521_010 Hb_002521_010 Hb_144783_010--Hb_002521_010 Hb_003893_100 Hb_003893_100 Hb_144783_010--Hb_003893_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 2.59278 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.1649 1.83114

CAGE analysis