Hb_009113_050

Information

Type -
Description -
Location Contig9113: 40976-44153
Sequence    

Annotation

kegg
ID pxb:103953524
description uncharacterized LOC103953524
nr
ID XP_012085372.1
description PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SHB5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0528610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62142: 41073-44162
cDNA
(Sanger)
(ID:Location)		 031_G15.ab1: 41073-44162

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009113_050 0.0 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
2 Hb_000635_150 0.0870608167 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
3 Hb_006816_530 0.0910755338 - - 60S ribosomal protein L18, putative [Ricinus communis]
4 Hb_000496_120 0.0946487169 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
5 Hb_000975_110 0.0982807256 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
6 Hb_011644_030 0.0991072633 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
7 Hb_000024_030 0.1007321418 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
8 Hb_000123_170 0.1024979996 - - Rab3 [Hevea brasiliensis]
9 Hb_002061_040 0.1026486302 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
10 Hb_007441_040 0.1033569313 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
11 Hb_000122_020 0.1062340198 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
12 Hb_027073_040 0.1063705551 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
13 Hb_000005_080 0.1064390488 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
14 Hb_001519_050 0.1070003072 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
15 Hb_000364_030 0.1073808865 - - RNA binding protein, putative [Ricinus communis]
16 Hb_000270_370 0.1079296943 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
17 Hb_001054_100 0.1085751298 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
18 Hb_000102_020 0.1094204676 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
19 Hb_001653_020 0.1098252419 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
20 Hb_000985_060 0.1102980395 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009113_050 Hb_009113_050 Hb_000635_150 Hb_000635_150 Hb_009113_050--Hb_000635_150 Hb_006816_530 Hb_006816_530 Hb_009113_050--Hb_006816_530 Hb_000496_120 Hb_000496_120 Hb_009113_050--Hb_000496_120 Hb_000975_110 Hb_000975_110 Hb_009113_050--Hb_000975_110 Hb_011644_030 Hb_011644_030 Hb_009113_050--Hb_011644_030 Hb_000024_030 Hb_000024_030 Hb_009113_050--Hb_000024_030 Hb_000985_060 Hb_000985_060 Hb_000635_150--Hb_000985_060 Hb_001519_050 Hb_001519_050 Hb_000635_150--Hb_001519_050 Hb_005092_060 Hb_005092_060 Hb_000635_150--Hb_005092_060 Hb_000125_190 Hb_000125_190 Hb_000635_150--Hb_000125_190 Hb_002759_060 Hb_002759_060 Hb_000635_150--Hb_002759_060 Hb_002005_020 Hb_002005_020 Hb_000635_150--Hb_002005_020 Hb_001814_050 Hb_001814_050 Hb_006816_530--Hb_001814_050 Hb_001505_020 Hb_001505_020 Hb_006816_530--Hb_001505_020 Hb_003226_210 Hb_003226_210 Hb_006816_530--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_006816_530--Hb_001214_160 Hb_002713_070 Hb_002713_070 Hb_006816_530--Hb_002713_070 Hb_001421_060 Hb_001421_060 Hb_006816_530--Hb_001421_060 Hb_000215_060 Hb_000215_060 Hb_000496_120--Hb_000215_060 Hb_091433_020 Hb_091433_020 Hb_000496_120--Hb_091433_020 Hb_033642_080 Hb_033642_080 Hb_000496_120--Hb_033642_080 Hb_004216_050 Hb_004216_050 Hb_000496_120--Hb_004216_050 Hb_000496_120--Hb_001814_050 Hb_005305_150 Hb_005305_150 Hb_000496_120--Hb_005305_150 Hb_000975_110--Hb_000024_030 Hb_011161_050 Hb_011161_050 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000975_110--Hb_003561_030 Hb_001307_090 Hb_001307_090 Hb_000975_110--Hb_001307_090 Hb_001433_050 Hb_001433_050 Hb_000975_110--Hb_001433_050 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_011644_030--Hb_004567_120 Hb_003994_040 Hb_003994_040 Hb_011644_030--Hb_003994_040 Hb_026048_070 Hb_026048_070 Hb_011644_030--Hb_026048_070 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_000024_030--Hb_001433_050 Hb_124755_010 Hb_124755_010 Hb_000024_030--Hb_124755_010 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_000024_030--Hb_006816_530 Hb_002471_080 Hb_002471_080 Hb_000024_030--Hb_002471_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9294 6.12955 5.72478 13.2488 4.39581 17.0165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.5649 30.5539 21.8205 17.7854 5.37182

CAGE analysis