Hb_009113_070

Information

Type -
Description -
Location Contig9113: 53900-58618
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07510g
description POPTRDRAFT_880825; hypothetical protein
nr
ID XP_002315592.2
description hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
swissprot
ID Q9DC48
description Pre-mRNA-processing factor 17 OS=Mus musculus GN=Cdc40 PE=2 SV=1
trembl
ID B9HSV2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07510g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62146: 54627-55018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009113_070 0.0 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
2 Hb_000398_040 0.0654090796 - - Auxin response factor, putative [Ricinus communis]
3 Hb_172932_010 0.0764748299 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_011534_030 0.0766404305 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
5 Hb_000617_150 0.0864155456 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
6 Hb_000841_020 0.0892733022 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
7 Hb_000143_030 0.0924650726 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
8 Hb_003688_150 0.0942086317 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
9 Hb_011909_100 0.0977826302 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001775_110 0.0980798163 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
11 Hb_000108_190 0.0999421472 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
12 Hb_003053_020 0.1007550412 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
13 Hb_005183_120 0.1007584767 - - protein translocase, putative [Ricinus communis]
14 Hb_086639_030 0.1007881389 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_001454_190 0.1028602612 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
16 Hb_001083_020 0.1032691632 - - -
17 Hb_114336_020 0.1048452343 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
18 Hb_001663_050 0.1075754375 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
19 Hb_000120_680 0.1090431904 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
20 Hb_001360_050 0.1106853028 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009113_070 Hb_009113_070 Hb_000398_040 Hb_000398_040 Hb_009113_070--Hb_000398_040 Hb_172932_010 Hb_172932_010 Hb_009113_070--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_009113_070--Hb_011534_030 Hb_000617_150 Hb_000617_150 Hb_009113_070--Hb_000617_150 Hb_000841_020 Hb_000841_020 Hb_009113_070--Hb_000841_020 Hb_000143_030 Hb_000143_030 Hb_009113_070--Hb_000143_030 Hb_001775_110 Hb_001775_110 Hb_000398_040--Hb_001775_110 Hb_000398_040--Hb_000841_020 Hb_001083_020 Hb_001083_020 Hb_000398_040--Hb_001083_020 Hb_114336_020 Hb_114336_020 Hb_000398_040--Hb_114336_020 Hb_000398_040--Hb_011534_030 Hb_172932_010--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_172932_010--Hb_001454_190 Hb_172932_010--Hb_000617_150 Hb_086639_030 Hb_086639_030 Hb_172932_010--Hb_086639_030 Hb_002235_280 Hb_002235_280 Hb_172932_010--Hb_002235_280 Hb_011534_030--Hb_000617_150 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_011534_030--Hb_001454_190 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_001699_130 Hb_001699_130 Hb_000617_150--Hb_001699_130 Hb_000617_150--Hb_001454_190 Hb_008695_100 Hb_008695_100 Hb_000617_150--Hb_008695_100 Hb_004126_070 Hb_004126_070 Hb_000841_020--Hb_004126_070 Hb_017225_020 Hb_017225_020 Hb_000841_020--Hb_017225_020 Hb_000108_190 Hb_000108_190 Hb_000841_020--Hb_000108_190 Hb_002111_040 Hb_002111_040 Hb_000841_020--Hb_002111_040 Hb_005183_120 Hb_005183_120 Hb_000143_030--Hb_005183_120 Hb_001898_160 Hb_001898_160 Hb_000143_030--Hb_001898_160 Hb_000047_030 Hb_000047_030 Hb_000143_030--Hb_000047_030 Hb_000676_150 Hb_000676_150 Hb_000143_030--Hb_000676_150 Hb_004116_140 Hb_004116_140 Hb_000143_030--Hb_004116_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16024 0.804404 0.876625 0.787578 1.68927 1.24219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.60159 3.41817 3.83283 2.16066 1.884

CAGE analysis