Hb_009117_020

Information

Type -
Description -
Location Contig9117: 13623-13967
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08660g
description RALF-LIKE 32 family protein
nr
ID XP_006373094.1
description RALF-LIKE 32 family protein [Populus trichocarpa]
swissprot
ID O23262
description Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1
trembl
ID B9N0U4
description RALF-LIKE 32 family protein OS=Populus trichocarpa GN=POPTR_0017s08660g PE=4 SV=1
Gene Ontology
ID GO:0007154
description protein ralf-like 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62148: 13617-14010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009117_020 0.0 - - RALF-LIKE 32 family protein [Populus trichocarpa]
2 Hb_001401_120 0.0613982369 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
3 Hb_115572_010 0.0622259327 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
4 Hb_148262_010 0.0633345132 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011381_050 0.0801892195 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
6 Hb_005614_020 0.0980272454 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
7 Hb_026124_020 0.0999528431 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
8 Hb_135052_010 0.1027904258 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_000599_160 0.1033405547 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
10 Hb_003638_020 0.1035230433 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
11 Hb_029665_010 0.1049595438 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_000339_060 0.1053700578 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_002499_030 0.1097125777 - - receptor-kinase, putative [Ricinus communis]
14 Hb_007579_030 0.11071257 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_004225_120 0.1151515562 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
16 Hb_070771_010 0.1159128904 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
17 Hb_011224_070 0.1173132401 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
18 Hb_000197_260 0.117837464 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
19 Hb_001722_110 0.1181430674 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
20 Hb_000083_200 0.1191418954 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009117_020 Hb_009117_020 Hb_001401_120 Hb_001401_120 Hb_009117_020--Hb_001401_120 Hb_115572_010 Hb_115572_010 Hb_009117_020--Hb_115572_010 Hb_148262_010 Hb_148262_010 Hb_009117_020--Hb_148262_010 Hb_011381_050 Hb_011381_050 Hb_009117_020--Hb_011381_050 Hb_005614_020 Hb_005614_020 Hb_009117_020--Hb_005614_020 Hb_026124_020 Hb_026124_020 Hb_009117_020--Hb_026124_020 Hb_001401_120--Hb_148262_010 Hb_001401_120--Hb_026124_020 Hb_007579_030 Hb_007579_030 Hb_001401_120--Hb_007579_030 Hb_029238_040 Hb_029238_040 Hb_001401_120--Hb_029238_040 Hb_001366_300 Hb_001366_300 Hb_001401_120--Hb_001366_300 Hb_115572_010--Hb_011381_050 Hb_000083_200 Hb_000083_200 Hb_115572_010--Hb_000083_200 Hb_001349_040 Hb_001349_040 Hb_115572_010--Hb_001349_040 Hb_002186_110 Hb_002186_110 Hb_115572_010--Hb_002186_110 Hb_115572_010--Hb_001401_120 Hb_148262_010--Hb_026124_020 Hb_000012_380 Hb_000012_380 Hb_148262_010--Hb_000012_380 Hb_000245_110 Hb_000245_110 Hb_148262_010--Hb_000245_110 Hb_148262_010--Hb_007579_030 Hb_011381_050--Hb_002186_110 Hb_011381_050--Hb_001401_120 Hb_036520_030 Hb_036520_030 Hb_011381_050--Hb_036520_030 Hb_000197_260 Hb_000197_260 Hb_011381_050--Hb_000197_260 Hb_003747_160 Hb_003747_160 Hb_005614_020--Hb_003747_160 Hb_002499_030 Hb_002499_030 Hb_005614_020--Hb_002499_030 Hb_011224_070 Hb_011224_070 Hb_005614_020--Hb_011224_070 Hb_015807_090 Hb_015807_090 Hb_005614_020--Hb_015807_090 Hb_004225_120 Hb_004225_120 Hb_005614_020--Hb_004225_120 Hb_042083_010 Hb_042083_010 Hb_005614_020--Hb_042083_010 Hb_026124_020--Hb_000012_380 Hb_026124_020--Hb_000245_110 Hb_026124_020--Hb_001366_300 Hb_077774_010 Hb_077774_010 Hb_026124_020--Hb_077774_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.58648 2.65001 26.8874 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 10.1973

CAGE analysis