Hb_009118_010

Information

Type -
Description -
Location Contig9118: 27612-34121
Sequence    

Annotation

kegg
ID rcu:RCOM_0364790
description methionine aminopeptidase, putative (EC:3.4.11.18)
nr
ID XP_002529218.1
description methionine aminopeptidase, putative [Ricinus communis]
swissprot
ID Q56Y85
description Methionine aminopeptidase 2B OS=Arabidopsis thaliana GN=MAP2B PE=2 SV=2
trembl
ID B9ST99
description Methionine aminopeptidase 2 OS=Ricinus communis GN=RCOM_0364790 PE=3 SV=1
Gene Ontology
ID GO:0005737
description methionine aminopeptidase 2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62151: 27828-34576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009118_010 0.0 - - methionine aminopeptidase, putative [Ricinus communis]
2 Hb_003602_040 0.0645403944 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_004608_020 0.0654483929 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
4 Hb_000012_090 0.078667847 - - 3'-5' exonuclease, putative [Ricinus communis]
5 Hb_000322_050 0.0816159327 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
6 Hb_003434_060 0.0819323052 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
7 Hb_000956_030 0.0820160793 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
8 Hb_000116_170 0.0820857735 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
9 Hb_006922_080 0.0821268959 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
10 Hb_028639_060 0.0849824017 - - transporter, putative [Ricinus communis]
11 Hb_001221_040 0.0857816697 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
12 Hb_009775_050 0.0873968426 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
13 Hb_000457_060 0.0876365203 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_000017_340 0.0883289893 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
15 Hb_123475_010 0.0886931176 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
16 Hb_007407_040 0.0890795134 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_006663_100 0.0897243419 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
18 Hb_000236_320 0.0908172833 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
19 Hb_061908_010 0.0921146011 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
20 Hb_026099_010 0.092390724 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009118_010 Hb_009118_010 Hb_003602_040 Hb_003602_040 Hb_009118_010--Hb_003602_040 Hb_004608_020 Hb_004608_020 Hb_009118_010--Hb_004608_020 Hb_000012_090 Hb_000012_090 Hb_009118_010--Hb_000012_090 Hb_000322_050 Hb_000322_050 Hb_009118_010--Hb_000322_050 Hb_003434_060 Hb_003434_060 Hb_009118_010--Hb_003434_060 Hb_000956_030 Hb_000956_030 Hb_009118_010--Hb_000956_030 Hb_012760_170 Hb_012760_170 Hb_003602_040--Hb_012760_170 Hb_003602_040--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_003602_040--Hb_028639_060 Hb_000120_500 Hb_000120_500 Hb_003602_040--Hb_000120_500 Hb_006663_100 Hb_006663_100 Hb_003602_040--Hb_006663_100 Hb_000631_150 Hb_000631_150 Hb_004608_020--Hb_000631_150 Hb_000116_170 Hb_000116_170 Hb_004608_020--Hb_000116_170 Hb_000457_060 Hb_000457_060 Hb_004608_020--Hb_000457_060 Hb_000017_340 Hb_000017_340 Hb_004608_020--Hb_000017_340 Hb_000078_100 Hb_000078_100 Hb_004608_020--Hb_000078_100 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000012_090--Hb_003453_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_000322_050--Hb_003453_020 Hb_000322_050--Hb_000012_090 Hb_000322_050--Hb_028639_060 Hb_000322_050--Hb_003728_020 Hb_001221_230 Hb_001221_230 Hb_000322_050--Hb_001221_230 Hb_000032_570 Hb_000032_570 Hb_000322_050--Hb_000032_570 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_003434_060--Hb_000956_030 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_000956_030--Hb_004198_010 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.367 28.6426 24.693 26.9147 123.06 152.429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.945 48.8537 56.9803 72.1025 20.8744

CAGE analysis