Hb_009119_020

Information

Type -
Description -
Location Contig9119: 21659-22622
Sequence    

Annotation

kegg
ID mdm:103417817
description tobamovirus multiplication protein 2A-like
nr
ID KDO40488.1
description hypothetical protein CISIN_1g033708mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DCA8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033708mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description tobamovirus multiplication protein 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62153: 18897-33978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009119_020 0.0 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
2 Hb_007333_040 0.1331629974 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
3 Hb_019053_010 0.1373925548 - - -
4 Hb_115477_010 0.1444870223 - - Protein dom-3, putative [Ricinus communis]
5 Hb_106415_010 0.1445210003 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
6 Hb_051437_010 0.1486531834 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
7 Hb_033385_010 0.1559611942 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
8 Hb_068014_010 0.1577950954 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
9 Hb_181328_010 0.1587077478 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_009119_040 0.1633534466 - - PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
11 Hb_000329_560 0.173727478 - - conserved hypothetical protein [Ricinus communis]
12 Hb_051424_010 0.1741729353 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
13 Hb_000074_060 0.1795090211 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
14 Hb_006663_090 0.1843655169 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
15 Hb_149225_010 0.1848392732 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
16 Hb_007083_020 0.1855621908 - - hypothetical protein F775_15403 [Aegilops tauschii]
17 Hb_005679_070 0.1865689193 - - hypothetical protein M569_07741, partial [Genlisea aurea]
18 Hb_002611_020 0.1870414143 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
19 Hb_002400_330 0.1878010868 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
20 Hb_000825_030 0.1880409217 - - zinc binding dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009119_020 Hb_009119_020 Hb_007333_040 Hb_007333_040 Hb_009119_020--Hb_007333_040 Hb_019053_010 Hb_019053_010 Hb_009119_020--Hb_019053_010 Hb_115477_010 Hb_115477_010 Hb_009119_020--Hb_115477_010 Hb_106415_010 Hb_106415_010 Hb_009119_020--Hb_106415_010 Hb_051437_010 Hb_051437_010 Hb_009119_020--Hb_051437_010 Hb_033385_010 Hb_033385_010 Hb_009119_020--Hb_033385_010 Hb_007333_040--Hb_033385_010 Hb_007333_040--Hb_106415_010 Hb_054586_020 Hb_054586_020 Hb_007333_040--Hb_054586_020 Hb_181328_010 Hb_181328_010 Hb_007333_040--Hb_181328_010 Hb_007333_040--Hb_019053_010 Hb_068014_010 Hb_068014_010 Hb_019053_010--Hb_068014_010 Hb_019053_010--Hb_106415_010 Hb_000074_060 Hb_000074_060 Hb_019053_010--Hb_000074_060 Hb_019053_010--Hb_115477_010 Hb_003633_040 Hb_003633_040 Hb_019053_010--Hb_003633_040 Hb_115107_010 Hb_115107_010 Hb_115477_010--Hb_115107_010 Hb_168973_010 Hb_168973_010 Hb_115477_010--Hb_168973_010 Hb_006663_090 Hb_006663_090 Hb_115477_010--Hb_006663_090 Hb_007026_040 Hb_007026_040 Hb_115477_010--Hb_007026_040 Hb_001386_140 Hb_001386_140 Hb_115477_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_115477_010--Hb_010565_010 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_051424_010 Hb_051424_010 Hb_051437_010--Hb_051424_010 Hb_002742_070 Hb_002742_070 Hb_051437_010--Hb_002742_070 Hb_178041_010 Hb_178041_010 Hb_051437_010--Hb_178041_010 Hb_009119_040 Hb_009119_040 Hb_051437_010--Hb_009119_040 Hb_008029_020 Hb_008029_020 Hb_051437_010--Hb_008029_020 Hb_033385_010--Hb_068014_010 Hb_033385_010--Hb_099878_050 Hb_013358_090 Hb_013358_090 Hb_033385_010--Hb_013358_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.64264 3.06353 4.22576 29.2065 13.862 55.2033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.59237 3.91 4.69188 17.7095 8.26167

CAGE analysis