Hb_009119_040

Information

Type -
Description -
Location Contig9119: 26770-28499
Sequence    

Annotation

kegg
ID cit:102607083
description tobamovirus multiplication protein 2A-like
nr
ID XP_012074239.1
description PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
swissprot
ID Q9C5W7
description Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana GN=TOM2A PE=1 SV=1
trembl
ID A0A067KVD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10291 PE=4 SV=1
Gene Ontology
ID GO:0005794
description tobamovirus multiplication protein 2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62153: 18897-33978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009119_040 0.0 - - PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
2 Hb_005333_190 0.1181898117 - - PREDICTED: AP-4 complex subunit mu isoform X2 [Populus euphratica]
3 Hb_002400_330 0.1392650589 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
4 Hb_028912_040 0.1443641286 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
5 Hb_051437_010 0.1456451226 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
6 Hb_181328_010 0.1462548594 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_009529_040 0.1499311063 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
8 Hb_008484_010 0.1512410112 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
9 Hb_004223_290 0.1525800053 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
10 Hb_002611_020 0.1538401183 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
11 Hb_115107_010 0.1553578183 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
12 Hb_004875_030 0.1554061074 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
13 Hb_003683_180 0.1560744566 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000345_360 0.1567118537 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
15 Hb_009119_020 0.1633534466 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
16 Hb_149225_010 0.1641775908 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
17 Hb_041828_010 0.1644015651 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
18 Hb_007026_040 0.1663235666 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
19 Hb_115477_010 0.1680119034 - - Protein dom-3, putative [Ricinus communis]
20 Hb_004659_020 0.1701968126 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]

Gene co-expression network

sample Hb_009119_040 Hb_009119_040 Hb_005333_190 Hb_005333_190 Hb_009119_040--Hb_005333_190 Hb_002400_330 Hb_002400_330 Hb_009119_040--Hb_002400_330 Hb_028912_040 Hb_028912_040 Hb_009119_040--Hb_028912_040 Hb_051437_010 Hb_051437_010 Hb_009119_040--Hb_051437_010 Hb_181328_010 Hb_181328_010 Hb_009119_040--Hb_181328_010 Hb_009529_040 Hb_009529_040 Hb_009119_040--Hb_009529_040 Hb_005333_190--Hb_181328_010 Hb_004875_030 Hb_004875_030 Hb_005333_190--Hb_004875_030 Hb_002498_050 Hb_002498_050 Hb_005333_190--Hb_002498_050 Hb_013358_080 Hb_013358_080 Hb_005333_190--Hb_013358_080 Hb_000345_360 Hb_000345_360 Hb_005333_190--Hb_000345_360 Hb_008484_010 Hb_008484_010 Hb_002400_330--Hb_008484_010 Hb_002611_020 Hb_002611_020 Hb_002400_330--Hb_002611_020 Hb_041828_010 Hb_041828_010 Hb_002400_330--Hb_041828_010 Hb_050912_010 Hb_050912_010 Hb_002400_330--Hb_050912_010 Hb_149225_010 Hb_149225_010 Hb_002400_330--Hb_149225_010 Hb_004659_020 Hb_004659_020 Hb_002400_330--Hb_004659_020 Hb_127552_060 Hb_127552_060 Hb_028912_040--Hb_127552_060 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_004224_020 Hb_004224_020 Hb_028912_040--Hb_004224_020 Hb_187953_010 Hb_187953_010 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_000470_080 Hb_000470_080 Hb_028912_040--Hb_000470_080 Hb_051424_010 Hb_051424_010 Hb_051437_010--Hb_051424_010 Hb_002742_070 Hb_002742_070 Hb_051437_010--Hb_002742_070 Hb_178041_010 Hb_178041_010 Hb_051437_010--Hb_178041_010 Hb_008029_020 Hb_008029_020 Hb_051437_010--Hb_008029_020 Hb_009119_020 Hb_009119_020 Hb_051437_010--Hb_009119_020 Hb_181328_010--Hb_002611_020 Hb_013358_090 Hb_013358_090 Hb_181328_010--Hb_013358_090 Hb_181328_010--Hb_002400_330 Hb_106415_010 Hb_106415_010 Hb_181328_010--Hb_106415_010 Hb_086765_010 Hb_086765_010 Hb_181328_010--Hb_086765_010 Hb_181328_010--Hb_050912_010 Hb_115107_010 Hb_115107_010 Hb_009529_040--Hb_115107_010 Hb_000032_070 Hb_000032_070 Hb_009529_040--Hb_000032_070 Hb_001018_110 Hb_001018_110 Hb_009529_040--Hb_001018_110 Hb_002150_040 Hb_002150_040 Hb_009529_040--Hb_002150_040 Hb_009529_040--Hb_002611_020 Hb_009529_040--Hb_187953_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.53241 8.86729 4.39859 31.7087 24.2658 42.5778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42596 2.57357 11.0118 15.6043 14.6307

CAGE analysis