Hb_009122_010

Information

Type -
Description -
Location Contig9122: 18722-20187
Sequence    

Annotation

kegg
ID rcu:RCOM_0812690
description o-methyltransferase, putative (EC:2.1.1.104)
nr
ID XP_002518739.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q43095
description Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1
trembl
ID B9RYF5
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_0812690 PE=4 SV=1
Gene Ontology
ID GO:0042409
description caffeoyl- o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62160: 18724-20162
cDNA
(Sanger)
(ID:Location)		 007_J20.ab1: 18896-20162 , 019_B17.ab1: 18959-20162

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009122_010 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_002374_510 0.0928899627 - - Esterase precursor, putative [Ricinus communis]
3 Hb_001269_580 0.1044647714 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
4 Hb_001410_080 0.1072252546 - - ring finger protein, putative [Ricinus communis]
5 Hb_008304_050 0.1097576755 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
6 Hb_002750_040 0.1122543811 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
7 Hb_113766_010 0.1182537972 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
8 Hb_026198_020 0.1194558489 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
9 Hb_090390_010 0.1233256517 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
10 Hb_007370_010 0.1235558728 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
11 Hb_002890_110 0.1241339538 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
12 Hb_000103_300 0.1274911369 - - PREDICTED: perakine reductase-like [Jatropha curcas]
13 Hb_141194_020 0.1318247488 - - carbohydrate transporter, putative [Ricinus communis]
14 Hb_000910_030 0.1324180359 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003633_170 0.1335747453 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000389_100 0.1360376293 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
17 Hb_002391_240 0.1367088734 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001404_070 0.1367122625 - - sucrose synthase 4 [Hevea brasiliensis]
19 Hb_001268_290 0.1395867483 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
20 Hb_004957_050 0.1398029252 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]

Gene co-expression network

sample Hb_009122_010 Hb_009122_010 Hb_002374_510 Hb_002374_510 Hb_009122_010--Hb_002374_510 Hb_001269_580 Hb_001269_580 Hb_009122_010--Hb_001269_580 Hb_001410_080 Hb_001410_080 Hb_009122_010--Hb_001410_080 Hb_008304_050 Hb_008304_050 Hb_009122_010--Hb_008304_050 Hb_002750_040 Hb_002750_040 Hb_009122_010--Hb_002750_040 Hb_113766_010 Hb_113766_010 Hb_009122_010--Hb_113766_010 Hb_003371_280 Hb_003371_280 Hb_002374_510--Hb_003371_280 Hb_002374_510--Hb_113766_010 Hb_001269_660 Hb_001269_660 Hb_002374_510--Hb_001269_660 Hb_002370_020 Hb_002370_020 Hb_002374_510--Hb_002370_020 Hb_012395_060 Hb_012395_060 Hb_002374_510--Hb_012395_060 Hb_002890_110 Hb_002890_110 Hb_001269_580--Hb_002890_110 Hb_001269_580--Hb_002750_040 Hb_004117_020 Hb_004117_020 Hb_001269_580--Hb_004117_020 Hb_174541_030 Hb_174541_030 Hb_001269_580--Hb_174541_030 Hb_002203_020 Hb_002203_020 Hb_001269_580--Hb_002203_020 Hb_000910_030 Hb_000910_030 Hb_001410_080--Hb_000910_030 Hb_001268_290 Hb_001268_290 Hb_001410_080--Hb_001268_290 Hb_005332_160 Hb_005332_160 Hb_001410_080--Hb_005332_160 Hb_141194_020 Hb_141194_020 Hb_001410_080--Hb_141194_020 Hb_006386_010 Hb_006386_010 Hb_001410_080--Hb_006386_010 Hb_169077_030 Hb_169077_030 Hb_001410_080--Hb_169077_030 Hb_000389_100 Hb_000389_100 Hb_008304_050--Hb_000389_100 Hb_004893_010 Hb_004893_010 Hb_008304_050--Hb_004893_010 Hb_003633_170 Hb_003633_170 Hb_008304_050--Hb_003633_170 Hb_002566_020 Hb_002566_020 Hb_008304_050--Hb_002566_020 Hb_031224_010 Hb_031224_010 Hb_008304_050--Hb_031224_010 Hb_002783_180 Hb_002783_180 Hb_008304_050--Hb_002783_180 Hb_026198_020 Hb_026198_020 Hb_002750_040--Hb_026198_020 Hb_002750_040--Hb_113766_010 Hb_001404_070 Hb_001404_070 Hb_002750_040--Hb_001404_070 Hb_002391_240 Hb_002391_240 Hb_002750_040--Hb_002391_240 Hb_000103_300 Hb_000103_300 Hb_113766_010--Hb_000103_300 Hb_113766_010--Hb_002391_240 Hb_113766_010--Hb_026198_020 Hb_000152_570 Hb_000152_570 Hb_113766_010--Hb_000152_570 Hb_002284_060 Hb_002284_060 Hb_113766_010--Hb_002284_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82811 56.7759 88.0191 790.393 0.628997 0.860749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.6537 6.11732 0.894037 227.62 398.678

CAGE analysis