Hb_009150_020

Information

Type -
Description -
Location Contig9150: 20430-24922
Sequence    

Annotation

kegg
ID rcu:RCOM_1619660
description hypothetical protein
nr
ID XP_012067828.1
description PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LB67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15761 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62242: 22779-24915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009150_020 0.0 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
2 Hb_006117_080 0.0554653313 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
3 Hb_001279_120 0.0607255628 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
4 Hb_002783_040 0.0672721765 transcription factor TF Family: IWS1 -
5 Hb_003470_080 0.0685819143 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
6 Hb_002798_070 0.0696771722 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
7 Hb_000069_470 0.0707676401 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
8 Hb_012194_030 0.0711573596 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
9 Hb_001563_010 0.0713847679 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
10 Hb_002085_030 0.0714199082 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
11 Hb_002329_020 0.0754977169 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
12 Hb_001488_180 0.076772561 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
13 Hb_001104_190 0.0773622558 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
14 Hb_010712_050 0.0781692191 - - PREDICTED: protein ELC-like [Jatropha curcas]
15 Hb_024185_010 0.0794594287 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
16 Hb_002253_080 0.0811873895 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
17 Hb_002174_030 0.0813940944 - - transcription elongation factor s-II, putative [Ricinus communis]
18 Hb_002263_040 0.0821137989 - - carbon catabolite repressor protein, putative [Ricinus communis]
19 Hb_000661_130 0.082396385 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
20 Hb_009767_080 0.0838568683 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]

Gene co-expression network

sample Hb_009150_020 Hb_009150_020 Hb_006117_080 Hb_006117_080 Hb_009150_020--Hb_006117_080 Hb_001279_120 Hb_001279_120 Hb_009150_020--Hb_001279_120 Hb_002783_040 Hb_002783_040 Hb_009150_020--Hb_002783_040 Hb_003470_080 Hb_003470_080 Hb_009150_020--Hb_003470_080 Hb_002798_070 Hb_002798_070 Hb_009150_020--Hb_002798_070 Hb_000069_470 Hb_000069_470 Hb_009150_020--Hb_000069_470 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_006117_080--Hb_000069_470 Hb_000321_150 Hb_000321_150 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_001545_150 Hb_001545_150 Hb_001279_120--Hb_001545_150 Hb_000099_040 Hb_000099_040 Hb_001279_120--Hb_000099_040 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030 Hb_002234_170 Hb_002234_170 Hb_002783_040--Hb_002234_170 Hb_002783_040--Hb_002798_070 Hb_000061_030 Hb_000061_030 Hb_002783_040--Hb_000061_030 Hb_002253_080 Hb_002253_080 Hb_002783_040--Hb_002253_080 Hb_001322_130 Hb_001322_130 Hb_002783_040--Hb_001322_130 Hb_000003_190 Hb_000003_190 Hb_003470_080--Hb_000003_190 Hb_003206_130 Hb_003206_130 Hb_003470_080--Hb_003206_130 Hb_003470_080--Hb_002253_080 Hb_001080_230 Hb_001080_230 Hb_003470_080--Hb_001080_230 Hb_003470_080--Hb_000069_470 Hb_000170_150 Hb_000170_150 Hb_003470_080--Hb_000170_150 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.07225 18.6115 7.72668 5.91423 9.16154 7.86175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.50025 7.56275 8.6092 7.2828 12.7126

CAGE analysis