Hb_009151_010

Information

Type -
Description -
Location Contig9151: 14675-25348
Sequence    

Annotation

kegg
ID rcu:RCOM_1552090
description Peroxidase 39 precursor, putative (EC:1.11.1.7)
nr
ID XP_010109530.1
description Peroxidase 3 [Morus notabilis]
swissprot
ID O23044
description Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1
trembl
ID W9SRP8
description Peroxidase OS=Morus notabilis GN=L484_018265 PE=3 SV=1
Gene Ontology
ID GO:0004601
description peroxidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62245: 22395-22568 , PASA_asmbl_62246: 22996-25337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009151_010 0.0 - - Peroxidase 3 [Morus notabilis]
2 Hb_002311_030 0.0735825629 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004162_200 0.0739432723 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
4 Hb_005116_150 0.076588468 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
5 Hb_002067_070 0.0771445823 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
6 Hb_007113_060 0.0805057019 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
7 Hb_000531_030 0.08182042 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002471_130 0.0834639606 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
9 Hb_031984_020 0.0850150487 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007760_020 0.0876589262 - - PREDICTED: expansin-A1 [Populus euphratica]
11 Hb_005440_040 0.0902498882 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
12 Hb_057862_010 0.097186531 - - protein binding protein, putative [Ricinus communis]
13 Hb_006922_120 0.0980700097 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
14 Hb_011082_030 0.10264909 - - hypothetical protein RCOM_0852210 [Ricinus communis]
15 Hb_011344_040 0.1028442118 - - PREDICTED: 21 kDa protein [Jatropha curcas]
16 Hb_002783_100 0.1041707239 - - Zeamatin precursor, putative [Ricinus communis]
17 Hb_006977_010 0.1042517094 - - unnamed protein product [Vitis vinifera]
18 Hb_002740_140 0.1078977254 - - hypothetical protein L484_022679 [Morus notabilis]
19 Hb_000816_140 0.1084900885 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
20 Hb_004020_030 0.1085325095 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]

Gene co-expression network

sample Hb_009151_010 Hb_009151_010 Hb_002311_030 Hb_002311_030 Hb_009151_010--Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_009151_010--Hb_004162_200 Hb_005116_150 Hb_005116_150 Hb_009151_010--Hb_005116_150 Hb_002067_070 Hb_002067_070 Hb_009151_010--Hb_002067_070 Hb_007113_060 Hb_007113_060 Hb_009151_010--Hb_007113_060 Hb_000531_030 Hb_000531_030 Hb_009151_010--Hb_000531_030 Hb_002311_030--Hb_004162_200 Hb_002311_030--Hb_007113_060 Hb_002740_140 Hb_002740_140 Hb_002311_030--Hb_002740_140 Hb_057862_010 Hb_057862_010 Hb_002311_030--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_002311_030--Hb_162450_010 Hb_004162_200--Hb_002067_070 Hb_004162_200--Hb_007113_060 Hb_005295_030 Hb_005295_030 Hb_004162_200--Hb_005295_030 Hb_050898_040 Hb_050898_040 Hb_004162_200--Hb_050898_040 Hb_007760_020 Hb_007760_020 Hb_005116_150--Hb_007760_020 Hb_005116_150--Hb_000531_030 Hb_005116_150--Hb_007113_060 Hb_005116_150--Hb_002311_030 Hb_010142_060 Hb_010142_060 Hb_005116_150--Hb_010142_060 Hb_002067_070--Hb_005295_030 Hb_000680_100 Hb_000680_100 Hb_002067_070--Hb_000680_100 Hb_002067_070--Hb_002311_030 Hb_002067_070--Hb_050898_040 Hb_006922_120 Hb_006922_120 Hb_007113_060--Hb_006922_120 Hb_000816_140 Hb_000816_140 Hb_007113_060--Hb_000816_140 Hb_005440_040 Hb_005440_040 Hb_007113_060--Hb_005440_040 Hb_007113_060--Hb_162450_010 Hb_001104_060 Hb_001104_060 Hb_000531_030--Hb_001104_060 Hb_000531_030--Hb_005440_040 Hb_000227_360 Hb_000227_360 Hb_000531_030--Hb_000227_360 Hb_001456_030 Hb_001456_030 Hb_000531_030--Hb_001456_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0802694 1.27704 4.87445 0 0.0389098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0239922 0 0 0.090172 1.83209

CAGE analysis