Hb_009151_020

Information

Type -
Description -
Location Contig9151: 58916-79656
Sequence    

Annotation

kegg
ID tcc:TCM_030969
description DNA binding,nucleotide bindin isoform 1
nr
ID XP_012086374.1
description PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
swissprot
ID Q9LRE6
description DNA polymerase delta catalytic subunit OS=Oryza sativa subsp. japonica GN=POLD1 PE=2 SV=1
trembl
ID A0A067JPG7
description DNA polymerase OS=Jatropha curcas GN=JCGZ_22891 PE=3 SV=1
Gene Ontology
ID GO:0000166
description dna polymerase delta catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62248: 59016-61260 , PASA_asmbl_62249: 61516-64542 , PASA_asmbl_62250: 64562-79189 , PASA_asmbl_62251: 64559-66793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009151_020 0.0 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
2 Hb_000347_570 0.0552890795 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
3 Hb_020665_030 0.0573638925 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000329_130 0.0607469857 - - beta-tubulin cofactor d, putative [Ricinus communis]
5 Hb_001178_150 0.0663212232 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
6 Hb_001473_090 0.0685117612 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
7 Hb_000914_080 0.0692994315 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_005895_040 0.0697025902 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
9 Hb_002411_120 0.0724825604 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
10 Hb_002301_270 0.0730537396 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
11 Hb_001771_120 0.0733245904 - - K+ transport growth defect-like protein [Hevea brasiliensis]
12 Hb_002477_130 0.0789552483 - - conserved hypothetical protein [Ricinus communis]
13 Hb_022693_030 0.0792220503 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
14 Hb_005892_030 0.0792756237 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
15 Hb_000025_650 0.0804717408 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
16 Hb_001085_320 0.0804966077 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
17 Hb_000567_010 0.0807101727 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
18 Hb_003124_130 0.0807188349 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
19 Hb_000029_320 0.0813113706 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
20 Hb_005408_020 0.0818935033 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009151_020 Hb_009151_020 Hb_000347_570 Hb_000347_570 Hb_009151_020--Hb_000347_570 Hb_020665_030 Hb_020665_030 Hb_009151_020--Hb_020665_030 Hb_000329_130 Hb_000329_130 Hb_009151_020--Hb_000329_130 Hb_001178_150 Hb_001178_150 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_000347_570--Hb_001178_150 Hb_000347_570--Hb_001473_090 Hb_000347_570--Hb_020665_030 Hb_000025_650 Hb_000025_650 Hb_000347_570--Hb_000025_650 Hb_001417_050 Hb_001417_050 Hb_000347_570--Hb_001417_050 Hb_020665_030--Hb_000329_130 Hb_000714_050 Hb_000714_050 Hb_020665_030--Hb_000714_050 Hb_003847_120 Hb_003847_120 Hb_020665_030--Hb_003847_120 Hb_000320_200 Hb_000320_200 Hb_020665_030--Hb_000320_200 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_000935_090 Hb_000935_090 Hb_001178_150--Hb_000935_090 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001178_150--Hb_001473_090 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_002888_070 Hb_002888_070 Hb_000914_080--Hb_002888_070 Hb_000914_080--Hb_000329_130 Hb_003126_100 Hb_003126_100 Hb_000914_080--Hb_003126_100 Hb_000914_080--Hb_017895_020 Hb_005408_020 Hb_005408_020 Hb_000914_080--Hb_005408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.72649 7.13866 5.11272 4.30189 13.4652 13.5827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.30716 3.99392 3.12782 4.34722 4.05272

CAGE analysis