Hb_009158_030

Information

Type transcription factor
Description TF Family: HB
Location Contig9158: 27696-29185
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09860g
description POPTRDRAFT_572441; homeobox leucine zipper family protein
nr
ID XP_002320889.1
description homeobox leucine zipper family protein [Populus trichocarpa]
swissprot
ID P46897
description Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2
trembl
ID B9I924
description Homeobox leucine zipper family protein OS=Populus trichocarpa GN=POPTR_0014s09860g PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62259: 27764-29072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009158_030 0.0 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
2 Hb_005056_060 0.104338319 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
3 Hb_002232_170 0.106743725 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
4 Hb_000395_080 0.106964012 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
5 Hb_005565_030 0.1087786405 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
6 Hb_004221_010 0.118039907 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
7 Hb_004310_030 0.1204317742 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
8 Hb_004108_080 0.1216014242 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
9 Hb_002263_010 0.1229867049 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
10 Hb_004374_200 0.1238991812 - - putative GMP synthase [Oxybasis rubra]
11 Hb_001818_080 0.125063047 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
12 Hb_008554_020 0.1275128508 - - -
13 Hb_006452_030 0.1284107965 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_002111_030 0.1289314485 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
15 Hb_029879_110 0.1291809899 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
16 Hb_000003_480 0.1299847237 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
17 Hb_005329_020 0.1302831586 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
18 Hb_001009_040 0.1306024729 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
19 Hb_007254_040 0.1320208306 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
20 Hb_004055_010 0.1326678809 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009158_030 Hb_009158_030 Hb_005056_060 Hb_005056_060 Hb_009158_030--Hb_005056_060 Hb_002232_170 Hb_002232_170 Hb_009158_030--Hb_002232_170 Hb_000395_080 Hb_000395_080 Hb_009158_030--Hb_000395_080 Hb_005565_030 Hb_005565_030 Hb_009158_030--Hb_005565_030 Hb_004221_010 Hb_004221_010 Hb_009158_030--Hb_004221_010 Hb_004310_030 Hb_004310_030 Hb_009158_030--Hb_004310_030 Hb_004108_080 Hb_004108_080 Hb_005056_060--Hb_004108_080 Hb_000567_030 Hb_000567_030 Hb_005056_060--Hb_000567_030 Hb_005056_060--Hb_000395_080 Hb_005056_060--Hb_004310_030 Hb_005329_020 Hb_005329_020 Hb_005056_060--Hb_005329_020 Hb_007254_040 Hb_007254_040 Hb_005056_060--Hb_007254_040 Hb_007101_100 Hb_007101_100 Hb_002232_170--Hb_007101_100 Hb_015941_030 Hb_015941_030 Hb_002232_170--Hb_015941_030 Hb_000997_060 Hb_000997_060 Hb_002232_170--Hb_000997_060 Hb_000169_010 Hb_000169_010 Hb_002232_170--Hb_000169_010 Hb_002374_160 Hb_002374_160 Hb_002232_170--Hb_002374_160 Hb_000808_040 Hb_000808_040 Hb_002232_170--Hb_000808_040 Hb_011828_020 Hb_011828_020 Hb_000395_080--Hb_011828_020 Hb_000877_060 Hb_000877_060 Hb_000395_080--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_000395_080--Hb_001477_130 Hb_000696_340 Hb_000696_340 Hb_000395_080--Hb_000696_340 Hb_002137_020 Hb_002137_020 Hb_000395_080--Hb_002137_020 Hb_005215_030 Hb_005215_030 Hb_000395_080--Hb_005215_030 Hb_001818_080 Hb_001818_080 Hb_005565_030--Hb_001818_080 Hb_030312_040 Hb_030312_040 Hb_005565_030--Hb_030312_040 Hb_002111_030 Hb_002111_030 Hb_005565_030--Hb_002111_030 Hb_002263_010 Hb_002263_010 Hb_005565_030--Hb_002263_010 Hb_005565_030--Hb_015941_030 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_002762_060 Hb_002762_060 Hb_004221_010--Hb_002762_060 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_004221_010--Hb_000877_060 Hb_004310_030--Hb_007254_040 Hb_008554_020 Hb_008554_020 Hb_004310_030--Hb_008554_020 Hb_007894_140 Hb_007894_140 Hb_004310_030--Hb_007894_140 Hb_000638_080 Hb_000638_080 Hb_004310_030--Hb_000638_080 Hb_001135_050 Hb_001135_050 Hb_004310_030--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004310_030--Hb_005539_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.0935 45.3444 6.85235 30.478 42.8602 103.294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
136.208 59.6193 30.3813 44.5039 15.4543

CAGE analysis